hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-04503765/chunk_1/iprscan-20080810-04503765.nocrc
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Query sequence: fj00292
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 430.3     1e-124   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/6      63   149 ..     1   121 []    19.3     0.03
SM00112    2/6     173   258 ..     1   121 []    73.5  2.7e-17
SM00112    3/6     282   363 ..     1   121 []    84.0  1.8e-20
SM00112    4/6     387   468 ..     1   121 []    92.8  4.1e-23
SM00112    5/6     492   578 ..     1   121 []   100.6  1.8e-25
SM00112    6/6     609   687 ..     1   121 []    60.1  2.8e-13

Alignments of top-scoring domains:
SM00112: domain 1 of 6, from 63 to 149: score 19.3, E = 0.03
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
                      v  + +D g   e  +      +  + ++  ++++ +lFs++p++G 
     fj00292    63    VGNIVKDLG--LEPQE------LAEHGVRivsrgrmqLFSLNPRNG- 100  

                   ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
                              ++t++++DREe + +  +      ++++ + D+ +    
     fj00292   101 ----------SLVTAGRIDREELCAQSPR---CLVSFNILVEDKLN---- 133  

                   dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                l    +v v+++D+NDN P   
     fj00292   134 -------------LY---PVEVEIVDINDNTP    149  

SM00112: domain 2 of 6, from 173 to 258: score 73.5, E = 2.7e-17
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                        + D+D g    N+         + ++++++Fs+d ++   gp   
     fj00292   173    MEVYDPDVG---MNSL------QGFKLSGnsHFSVDVQSEAHGP--- 207  

                   kleiiittt.kpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt
                      +   +++++LDRE           ++Y+L+ +A+DgG p        
     fj00292   208 --KYPELVLeGTLDREGE---------AVYRLVLTAMDGGDPV------- 239  

                   rksqqtpplsstatvtvtVlDvNDNaP<-*
                           +ss a++ vtVlDvNDN P   
     fj00292   240 --------RSSVAQILVTVLDVNDNTP    258  

SM00112: domain 3 of 6, from 282 to 363: score 84.0, E = 1.8e-20
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.......lFsIdpetGtn
                      v+AtD D+g     g+      vtYs++  +++ ++ F ++  tG  
     fj00292   282    VTATDQDEG---VHGE------VTYSFVKitekisqIFCLNVLTG-- 317  

                   gpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgd
                            +i+t++ LD+E+          s Y+L veA+Dg g     
     fj00292   318 ---------EISTSANLDYEDS---------SFYELGVEARDGPG----- 344  

                   ssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                               l + a v +t+lDvNDN P   
     fj00292   345 ------------LRDRAKVLITILDVNDNVP    363  

SM00112: domain 4 of 6, from 387 to 468: score 92.8, E = 4.1e-23
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..lFsIdpetGtngpsLv
                      +++ D+Dsg    Ng       vt+si ++ +F+++++ G+      
     fj00292   387    FQVFDRDSG---LNGL------VTCSIPRslPFELEKSVGN------ 418  

                   kleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssptr
                     ++ ++t+++LDREe            Y++tv+AtD+G+pp        
     fj00292   419 --YYRLVTNAALDREEV---------FLYNITVTATDKGTPP-------- 449  

                   ksqqtpplsstatvtvtVlDvNDNaP<-*
                          ls+++ +  +V D NDN+P   
     fj00292   450 -------LSTETIISLNVADTNDNPP    468  

SM00112: domain 5 of 6, from 492 to 578: score 100.6, E = 1.8e-25
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils..........lFsIdpet
                      v+A D+D +   +N++      v+Ys+ +++ ++ + +++ sI+++t
     fj00292   492    VNALDPDVD---QNAQ------VSYSLAEdtlqgaplssYVSINSDT 529  

                   GtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpp
                   G           i+++++++D+E+             +L v+A+D+G pp
     fj00292   530 G-----------ILYALRSFDYEQL---------RDLQLWVTASDSGDPP 559  

                   pgdssptrksqqtpplsstatvtvtVlDvNDNaP<-*
                                  lss++++  +VlD+NDNaP   
     fj00292   560 ---------------LSSNVSLSLFVLDQNDNAP    578  

SM00112: domain 6 of 6, from 609 to 687: score 60.1, E = 2.8e-13
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      v+A+D+Dsg   +N++      ++Y++l  ++++lFs+  +tG    
     fj00292   609    VVAVDRDSG---QNAW------LSYRLLKasepgLFSVGLHTG---- 642  

                   sLvkleiiittt.kpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                          +++ +++ LDR++          +  +L+v ++D+G+pp    
     fj00292   643 -------EVRMArALLDRDAL---------K-QSLVVAVQDHGQPP---- 671  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              ls+t+t+tv V D     P   
     fj00292   672 -----------LSATVTLTVAVAD---RIP    687  

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