hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-14524900/chunk_1/iprscan-20090416-14524900.nocrc
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Query sequence: fj00447
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00096.16.ls Zinc finger, C2H2 type                          90.6    4.5e-24   3
PF00096.16.fs Zinc finger, C2H2 type                          84.7    2.7e-22   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00096.16.fs   1/3     102   124 ..     1    24 []    28.5  7.5e-06
PF00096.16.ls   1/3     102   124 ..     1    24 []    30.5  5.6e-06
PF00096.16.fs   2/3     130   152 ..     1    24 []    28.0  9.9e-06
PF00096.16.ls   2/3     130   152 ..     1    24 []    30.0  7.8e-06
PF00096.16.fs   3/3     160   183 ..     1    24 []    28.2  9.1e-06
PF00096.16.ls   3/3     160   183 ..     1    24 []    30.1  7.1e-06

Alignments of top-scoring domains:
PF00096.16.fs: domain 1 of 3, from 102 to 124: score 28.5, E = 7.5e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ +Cgk+F++ snL+ H+r+H   
     fj00447   102    DTCE-YCGKVFKNCSNLTVHRRSH    124  

PF00096.16.ls: domain 1 of 3, from 102 to 124: score 30.5, E = 5.6e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                       +C+ +Cgk+F++ snL+ H+r+H   
     fj00447   102    DTCE-YCGKVFKNCSNLTVHRRSH    124  

PF00096.16.fs: domain 2 of 3, from 130 to 152: score 28.0, E = 9.9e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+  C++++ ++s L+rH++tH   
     fj00447   130    YKCE-LCNYACAQSSKLTRHMKTH    152  

PF00096.16.ls: domain 2 of 3, from 130 to 152: score 30.0, E = 7.8e-06
                   *->ykCpfdCgksFsrksnLkrHlrtH<-*
                      ykC+  C++++ ++s L+rH++tH   
     fj00447   130    YKCE-LCNYACAQSSKLTRHMKTH    152  

PF00096.16.fs: domain 3 of 3, from 160 to 183: score 28.2, E = 9.1e-06
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ykC+ +C+  Fs  s+L++H+++ H   
     fj00447   160    YKCE-ICKMPFSVYSTLEKHMKKwH    183  

PF00096.16.ls: domain 3 of 3, from 160 to 183: score 30.1, E = 7.1e-06
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      ykC+ +C+  Fs  s+L++H+++ H   
     fj00447   160    YKCE-ICKMPFSVYSTLEKHMKKwH    183  

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