hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-14524900/chunk_1/iprscan-20090416-14524900.nocrc
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Query sequence: fj00447
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                  67.0    2.3e-15   3

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/3     102   124 ..     1    23 []    17.7      1.6
SM00355      2/3     130   152 ..     1    23 []    29.4  0.00051
SM00355      3/3     160   183 ..     1    23 []    19.9     0.35

Alignments of top-scoring domains:
SM00355: domain 1 of 3, from 102 to 124: score 17.7, E = 1.6
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                       +C++ Cgk+f++ ++L+ H r+H   
     fj00447   102    DTCEY-CGKVFKNCsNLTVHRRSH    124  

SM00355: domain 2 of 3, from 130 to 152: score 29.4, E = 0.00051
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C++ + + + L+rHm++H   
     fj00447   130    YKCEL-CNYACAQSsKLTRHMKTH    152  

SM00355: domain 3 of 3, from 160 to 183: score 19.9, E = 0.35
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                      ykC+i C++ fs ++ L++Hm++ H   
     fj00447   160    YKCEI-CKMPFSVYsTLEKHMKkWH    183  

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