hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-14400357/chunk_1/iprscan-20090525-14400357.nocrc
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Query sequence: fj00449
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08927.1.fs Domain of unknown function (DUF1909)            89.8    2.2e-30   1
PF08927.1.ls Domain of unknown function (DUF1909)            91.8      2e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08927.1.fs   1/1      43   113 ..     1    74 []    89.8  2.2e-30
PF08927.1.ls   1/1      43   113 ..     1    74 []    91.8    2e-24

Alignments of top-scoring domains:
PF08927.1.fs: domain 1 of 1, from 43 to 113: score 89.8, E = 2.2e-30
                   *->GNGaKaqqkReRnaKkaakkgkkSQadqlKanekAlniqCkvCrqtF
                      ++G++++q++++naKk+a+ +kk++ dq+ a+++Al  +C vCr+++
     fj00449    43    ARGQQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQM 89   

                   lcTvrepaLkeHaenKHpKsdleeCFP<-*
                   +   +++++k+H+e+KHpK++l+++++   
     fj00449    90 P---DPKTFKQHFESKHPKTPLPPELA    113  

PF08927.1.ls: domain 1 of 1, from 43 to 113: score 91.8, E = 2e-24
                   *->GNGaKaqqkReRnaKkaakkgkkSQadqlKanekAlniqCkvCrqtF
                      ++G++++q++++naKk+a+ +kk++ dq+ a+++Al  +C vCr+++
     fj00449    43    ARGQQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQM 89   

                   lcTvrepaLkeHaenKHpKsdleeCFP<-*
                   +   +++++k+H+e+KHpK++l+++++   
     fj00449    90 P---DPKTFKQHFESKHPKTPLPPELA    113  

//