hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-04572336/chunk_1/iprscan-20080810-04572336.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fj00658
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04511.5.ls Der1-like family                               391.4   1.2e-114   1
PF04511.5.fs Der1-like family                               389.5   1.4e-114   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04511.5.fs   1/1      13   203 ..     1   210 []   389.5 1.4e-114
PF04511.5.ls   1/1      13   203 ..     1   210 []   391.4 1.2e-114

Alignments of top-scoring domains:
PF04511.5.fs: domain 1 of 1, from 13 to 203: score 389.5, E = 1.4e-114
                   *->iPpvTRyyltacvlltilvrlglisPlkLylnpeLVfkKfQiWRLlT
                      iPpv+R+y+tacvl+t +v+l+li+P++Ly+npeL+fk+fQiWRL+T
     fj00658    13    IPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLIT 59   

                   slfyfPvsggtgfkflfnlfflyrYssmLEkgsFrgrmvtaDFlymLiFg
                   ++++f   g+ gf+flfn++flyrY++mLE+gsFrgr  taDF++m++Fg
     fj00658    60 NFLFF---GPVGFNFLFNMIFLYRYCRMLEEGSFRGR--TADFVFMFLFG 104  

                   avlltilglIsglifvniPyypyfLgqslvfmlvYvWSrkNpdvqinFfg
                   ++l+t++gl     fv++    +fLgq++++mlvYvWSr+Np+v++nFfg
     fj00658   105 GFLMTLFGL-----FVSL----VFLGQAFTIMLVYVWSRRNPYVRMNFFG 145  

                   lirfkAkYLPwvLlgfsfilgnksllvdllGiivGHlYYtYEKFlafvYp
                   l++f+A++LPwvL+gfs++lgn s++vdllGi vGH+Y+    Fl++v+p
     fj00658   146 LLNFQAPFLPWVLMGFSLLLGN-SIIVDLLGIAVGHIYF----FLEDVFP 190  

                   rltgGkdlLkTPq<-*
                   +++gG++ LkTP+   
     fj00658   191 NQPGGIRILKTPS    203  

PF04511.5.ls: domain 1 of 1, from 13 to 203: score 391.4, E = 1.2e-114
                   *->iPpvTRyyltacvlltilvrlglisPlkLylnpeLVfkKfQiWRLlT
                      iPpv+R+y+tacvl+t +v+l+li+P++Ly+npeL+fk+fQiWRL+T
     fj00658    13    IPPVSRAYTTACVLTTAAVQLELITPFQLYFNPELIFKHFQIWRLIT 59   

                   slfyfPvsggtgfkflfnlfflyrYssmLEkgsFrgrmvtaDFlymLiFg
                   ++++f   g+ gf+flfn++flyrY++mLE+gsFrgr  taDF++m++Fg
     fj00658    60 NFLFF---GPVGFNFLFNMIFLYRYCRMLEEGSFRGR--TADFVFMFLFG 104  

                   avlltilglIsglifvniPyypyfLgqslvfmlvYvWSrkNpdvqinFfg
                   ++l+t++gl     fv++    +fLgq++++mlvYvWSr+Np+v++nFfg
     fj00658   105 GFLMTLFGL-----FVSL----VFLGQAFTIMLVYVWSRRNPYVRMNFFG 145  

                   lirfkAkYLPwvLlgfsfilgnksllvdllGiivGHlYYtYEKFlafvYp
                   l++f+A++LPwvL+gfs++lgn s++vdllGi vGH+Y+    Fl++v+p
     fj00658   146 LLNFQAPFLPWVLMGFSLLLGN-SIIVDLLGIAVGHIYF----FLEDVFP 190  

                   rltgGkdlLkTPq<-*
                   +++gG++ LkTP+   
     fj00658   191 NQPGGIRILKTPS    203  

//