hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-09200837/chunk_1/iprscan-20090618-09200837.nocrc
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Query sequence: fj00853
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07679.6.fs Immunoglobulin I-set domain                     50.8    3.2e-14   4
PF00047.15.fs Immunoglobulin domain                           32.1    4.7e-08   1
PF01462.9.fs Leucine rich repeat N-terminal domain           28.2    1.2e-07   1
PF00047.15.ls Immunoglobulin domain                           34.0    4.8e-07   1
PF01462.9.ls Leucine rich repeat N-terminal domain           30.0    7.8e-06   1
PF07679.6.ls Immunoglobulin I-set domain                     17.4    3.8e-05   1
PF00560.23.ls Leucine Rich Repeat                             24.6    0.00032   3
PF00560.23.fs Leucine Rich Repeat                             19.0    0.00038   3
PF08205.3.fs CD80-like C2-set immunoglobulin domain          16.5    0.00045   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01462.9.ls   1/1      36    63 ..     1    34 []    30.0  7.8e-06
PF01462.9.fs   1/1      36    63 ..     1    34 []    28.2  1.2e-07
PF00560.23.ls   2/3     133   155 ..     1    24 []    15.9     0.14
PF00560.23.fs   2/3     133   155 ..     1    24 []    14.0   0.0088
PF07679.6.ls   1/1     215   306 ..     1    96 []    17.4  3.8e-05
PF00047.15.ls   1/1     229   291 ..     1    65 []    34.0  4.8e-07
PF00047.15.fs   1/1     229   291 ..     1    65 []    32.1  4.7e-08
PF07679.6.fs   3/4     330   357 ..    24    55 ..    22.3  6.8e-06

Alignments of top-scoring domains:
PF01462.9.ls: domain 1 of 1, from 36 to 63: score 30.0, E = 7.8e-06
                   *->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-*
                      aCpa+C+Cs     +++++C++++ ++ +P  l    
     fj00853    36    ACPANCVCS-----KTEINCRRPDDGNLFPL-LE    63   

PF01462.9.fs: domain 1 of 1, from 36 to 63: score 28.2, E = 1.2e-07
                   *->aCpapCtCserytdglvVdCsgrgLtvavPrdlP<-*
                      aCpa+C+Cs     +++++C++++ ++ +P  l    
     fj00853    36    ACPANCVCS-----KTEINCRRPDDGNLFPL-LE    63   

PF00560.23.ls: domain 2 of 3, from 133 to 155: score 15.9, E = 0.14
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L++++Ls+ N +lt +l+   ++ l   
     fj00853   133    HLRYINLSS-N-RLT-TLSWQlFqTL    155  

PF00560.23.fs: domain 2 of 3, from 133 to 155: score 14.0, E = 0.0088
                   *->nLeeLdLsgCNpsltgslpss.l.nl<-*
                      +L++++Ls+ N +lt +l+   ++ l   
     fj00853   133    HLRYINLSS-N-RLT-TLSWQlFqTL    155  

PF07679.6.ls: domain 1 of 1, from 215 to 306: score 17.4, E = 3.8e-05
                   *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp
                      P+++    +++V+eG+ a+ +C+ +G+P P+V W   G +  +    
     fj00853   215    PEISVSHVNLTVREGDNAVITCNGSGSPLPDVDWIVTGLQSIN---- 257  

                   sdrfkvtydgGsgtyt.LtIsnvqpdDsG.kYtCvAtNsaGeaeasaeLt
                   ++  +  +++   ++ +Lt  nv+++D G + tC+A+N +G + as+ Lt
     fj00853   258 THQTNLNWTN--VHAInLTLVNVTSEDNGfTLTCIAENVVGMSNASVALT 305  

                   V<-*
                   V   
     fj00853   306 V    306  

PF00047.15.ls: domain 1 of 1, from 229 to 291: score 34.0, E = 4.8e-07
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+ + +tC    +g+p ++v W + g + ++ +++    +n+  +  
     fj00853   229    GDNAVITCNG--SGSPLPDVDWIVTGLqSInTHQTNLNWTNVHAIN- 272  

                   tsLtitnvtpe.DggtYtCvv<-*
                     Lt+ nvt+e+ g t tC +   
     fj00853   273 --LTLVNVTSEdNGFTLTCIA    291  

PF00047.15.fs: domain 1 of 1, from 229 to 291: score 32.1, E = 4.7e-08
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      G+ + +tC    +g+p ++v W + g + ++ +++    +n+  +  
     fj00853   229    GDNAVITCNG--SGSPLPDVDWIVTGLqSInTHQTNLNWTNVHAIN- 272  

                   tsLtitnvtpe.DggtYtCvv<-*
                     Lt+ nvt+e+ g t tC +   
     fj00853   273 --LTLVNVTSEdNGFTLTCIA    291  

PF07679.6.fs: domain 3 of 4, from 330 to 357: score 22.3, E = 6.8e-06
                   *->VtGtPePtVsWfKdGqplssvllpsdrfkvty<-*
                      V+G+P+Pt  W+++Gqpl++    s+ ++v y   
     fj00853   330    VRGNPPPTLHWLHNGQPLRE----SKIIHVEY    357  

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