hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-09200837/chunk_1/iprscan-20090618-09200837.nocrc
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Query sequence: fj00853
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00082                                                  52.2    6.9e-11   1
SM00409                                                  44.5    1.4e-08   1
SM00013                                                  30.0    0.00032   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00013    1/1      36    68 ..     1    38 []    30.0  0.00032
SM00082    1/1     165   213 ..     1    55 []    52.2  6.9e-11
SM00409    1/1     221   307 ..     1    58 []    44.5  1.4e-08

Alignments of top-scoring domains:
SM00013: domain 1 of 1, from 36 to 68: score 30.0, E = 0.00032
                   *->qCPapCtCspdfgtaVdCsgrgLttlevPldlPadttl<-*
                      +CPa+C+Cs    t+++C+++  + + +Pl l ++ +    
     fj00853    36    ACPANCVCS---KTEINCRRPDDG-NLFPL-LEGQDSG    68   

SM00082: domain 1 of 1, from 165 to 213: score 52.2, E = 6.9e-11
                   *->NPfnCDCeLrwLlrwleaqnnealqdpvsslrCasPeslrGqpllll
                      N fnC+C++rw+++w+e+   ea + ++ +l+C + +  +  pl+++
     fj00853   165    NFFNCSCDIRWMQLWQEQ--GEAKLNSQ-NLYCINADGSQL-PLFRM 207  

                   lpsefsCp<-*
                   +   ++C+   
     fj00853   208 N--ISQCD    213  

SM00409: domain 1 of 1, from 221 to 307: score 44.5, E = 1.4e-08
                   *->pp.vtvkeGesvtLtC.as.....titWy..................
                        ++tv+eG+++++tC+ s+++ + + W  ++ ++ ++++++ + ++
     fj00853   221    HVnLTVREGDNAVITCnGSgsplpDVDWIvtglqsinthqtnlnwtn 267  

                   .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                    +  +Lt+ nvt eD   g t tC a++  g+  +  ++ LtV+   
     fj00853   268 vhainLTLvNVTSEDN--GFTLTCIAEnvVGMSNA--SVALTVY    307  

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