hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-05084656/chunk_1/iprscan-20080810-05084656.nocrc
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Query sequence: fj00939
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00157.8.ls Pou domain - N-terminal to homeobox domain     190.5    3.7e-54   1
PF00157.8.fs Pou domain - N-terminal to homeobox domain     188.6    1.4e-53   1
PF00046.19.ls Homeobox domain                                 87.0    5.3e-23   1
PF00046.19.fs Homeobox domain                                 85.0    2.1e-22   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00157.8.fs   1/1     330   404 ..     1    78 []   188.6  1.4e-53
PF00157.8.ls   1/1     330   404 ..     1    78 []   190.5  3.7e-54
PF00046.19.fs   1/1     430   486 ..     1    57 []    85.0  2.1e-22
PF00046.19.ls   1/1     430   486 ..     1    57 []    87.0  5.3e-23

Alignments of top-scoring domains:
PF00157.8.fs: domain 1 of 1, from 330 to 404: score 188.6, E = 1.4e-53
                   *->deatdleeLEkFAkeFKqRRIkLGyTQadVGlALgalygPGvnafSQ
                      +e+ dleeLE+FAk+FKqRRIkLG+TQ+dVGlA+g+lyg   n+fSQ
     fj00939   330    EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYG---NDFSQ 373  

                   tTICRFEaLqLSfKNmcKLKPlLekWLeeAE<-*
                   tTI+RFEaL+LSfKNmcKLKPlLekWL++AE   
     fj00939   374 TTISRFEALNLSFKNMCKLKPLLEKWLNDAE    404  

PF00157.8.ls: domain 1 of 1, from 330 to 404: score 190.5, E = 3.7e-54
                   *->deatdleeLEkFAkeFKqRRIkLGyTQadVGlALgalygPGvnafSQ
                      +e+ dleeLE+FAk+FKqRRIkLG+TQ+dVGlA+g+lyg   n+fSQ
     fj00939   330    EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYG---NDFSQ 373  

                   tTICRFEaLqLSfKNmcKLKPlLekWLeeAE<-*
                   tTI+RFEaL+LSfKNmcKLKPlLekWL++AE   
     fj00939   374 TTISRFEALNLSFKNMCKLKPLLEKWLNDAE    404  

PF00046.19.fs: domain 1 of 1, from 430 to 486: score 85.0, E = 2.1e-22
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r+kRT++ ++ + +LEk F +n++P+ ee+  +A++L++++++++vW
     fj00939   430    RKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVW 476  

                   FQNRRaKwKk<-*
                   F+NRR+K+K+   
     fj00939   477 FCNRRQKEKR    486  

PF00046.19.ls: domain 1 of 1, from 430 to 486: score 87.0, E = 5.3e-23
                   *->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
                      r+kRT++ ++ + +LEk F +n++P+ ee+  +A++L++++++++vW
     fj00939   430    RKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVW 476  

                   FQNRRaKwKk<-*
                   F+NRR+K+K+   
     fj00939   477 FCNRRQKEKR    486  

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