hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-05084656/chunk_1/iprscan-20080810-05084656.nocrc
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Query sequence: fj00939
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00352                                                 190.3    1.9e-52   1
SM00389                                                  81.4    1.1e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00352    1/1     330   404 ..     1    78 []   190.3  1.9e-52
SM00389    1/1     429   491 ..     1    63 []    81.4  1.1e-19

Alignments of top-scoring domains:
SM00352: domain 1 of 1, from 330 to 404: score 190.3, E = 1.9e-52
                   *->deatdleeLEkFAkeFKqRRIkLGyTQadVGlALgalygPGvnafSQ
                      +e+ dleeLE+FAk+FKqRRIkLG+TQ+dVGlA+g+lyg   n+fSQ
     fj00939   330    EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYG---NDFSQ 373  

                   tTICRFEaLqLSfKNmcKLKPlLekWLeeAE<-*
                   tTI+RFEaL+LSfKNmcKLKPlLekWL++AE   
     fj00939   374 TTISRFEALNLSFKNMCKLKPLLEKWLNDAE    404  

SM00389: domain 1 of 1, from 429 to 491: score 81.4, E = 1.1e-19
                   *->krrkRtsftpeQleeLEkeFeknpYPsreereeLAkeLgLterqVkv
                      +r+kRts+  + + +LEk+F +n++P++ee+  +A++L++ +++++v
     fj00939   429    RRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRV 475  

                   WFQNRRakwkrqekkk<-*
                   WF+NRR+k+kr + ++   
     fj00939   476 WFCNRRQKEKRINPPS    491  

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