hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-09261733/chunk_1/iprscan-20090618-09261733.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj00968 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00069.15.ls Protein kinase domain 322.4 7.4e-94 1 PF00069.15.fs Protein kinase domain 320.5 2.8e-93 1 PF03607.8.ls Doublecortin 190.5 3.9e-54 2 PF03607.8.fs Doublecortin 186.6 4.5e-53 2 PF07714.7.fs Protein tyrosine kinase 57.8 1.1e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03607.8.ls 1/2 119 183 .. 1 69 [] 98.4 1.9e-26 PF03607.8.fs 1/2 119 183 .. 1 69 [] 96.5 4e-27 PF03607.8.ls 2/2 244 305 .. 1 69 [] 92.0 1.7e-24 PF03607.8.fs 2/2 244 305 .. 1 69 [] 90.1 2.8e-25 PF00069.15.fs 1/1 424 681 .. 1 287 [] 320.5 2.8e-93 PF00069.15.ls 1/1 424 681 .. 1 287 [] 322.4 7.4e-94 PF07714.7.fs 1/1 424 606 .. 1 201 [. 57.8 1.1e-16 Alignments of top-scoring domains: PF03607.8.ls: domain 1 of 2, from 119 to 183: score 98.4, E = 1.9e-26 *->lvvnrkrdvksfdaLLedLtkvvTekiklptGaaAvrklYTtDGshr ++++++r ++sfdaLL +Lt++++++++lp+G vr +YT+DGs++ fj00968 119 FAISSDR-FRSFDALLIELTRSLSDNVNLPQG---VRTIYTIDGSRK 161 islldeledggvYVAsgseaFk<-* +++ldel +g+ YV++++e+F+ fj00968 162 VTSLDELLEGESYVCASNEPFR 183 PF03607.8.fs: domain 1 of 2, from 119 to 183: score 96.5, E = 4e-27 *->lvvnrkrdvksfdaLLedLtkvvTekiklptGaaAvrklYTtDGshr ++++++r ++sfdaLL +Lt++++++++lp+G vr +YT+DGs++ fj00968 119 FAISSDR-FRSFDALLIELTRSLSDNVNLPQG---VRTIYTIDGSRK 161 islldeledggvYVAsgseaFk<-* +++ldel +g+ YV++++e+F+ fj00968 162 VTSLDELLEGESYVCASNEPFR 183 PF03607.8.ls: domain 2 of 2, from 244 to 305: score 92.0, E = 1.7e-24 *->lvvnrkrdvksfdaLLedLtkvvTekiklptGaaAvrklYTtDGshr +++n+k+ ++sf+++L+d +Te ikl+ G+ v++l T+DG+++ fj00968 244 ILLNKKT-AHSFEQVLTD----ITEAIKLDSGV--VKRLCTLDGKQV 283 islldeledggvYVAsgseaFk<-* ++l+d++ d++v++A+g+e+F+ fj00968 284 TCLQDFFGDDDVFIACGPEKFR 305 PF03607.8.fs: domain 2 of 2, from 244 to 305: score 90.1, E = 2.8e-25 *->lvvnrkrdvksfdaLLedLtkvvTekiklptGaaAvrklYTtDGshr +++n+k+ ++sf+++L+d +Te ikl+ G+ v++l T+DG+++ fj00968 244 ILLNKKT-AHSFEQVLTD----ITEAIKLDSGV--VKRLCTLDGKQV 283 islldeledggvYVAsgseaFk<-* ++l+d++ d++v++A+g+e+F+ fj00968 284 TCLQDFFGDDDVFIACGPEKFR 305 PF00069.15.fs: domain 1 of 1, from 424 to 681: score 320.5, E = 2.8e-93 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr y++++++G G+f++V+++++++tgk++A+Kii+k +k++ +++++ fj00968 424 YKIGKVIGDGNFAVVKECIDRSTGKEFALKIIDK--AKCCGKEHLIE 468 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse + E++il+r++HpNI+ l + +e+ ++l lV+E++ gG dLfd+++ fj00968 469 N-EVSILRRVKHPNIIMLVEEMETATELFLVMELVKGG----DLFDAIT- 512 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILld.nng +++++ +e++ +++ ++ +l YLH +i+HRD+KPeN+L+ + + fj00968 513 --SSTKY--TERDGSAMVYNLANALRYLHGLSIVHRDIKPENLLVCeYPD 558 vvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkv + +lK++DFGlA t ++l+t++GTp Y+APE++ +gyg kv fj00968 559 GT-KSLKLGDFGLA----TvVEGpLYTVCGTPTYVAPEIIA-ETGYGLKV 602 DvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewds D+W++Gvi y+ll+G pPF++e ++ q l+++il ++lef+ p+wd+ fj00968 603 DIWAAGVITYILLCGFPPFRSE---NNLQEDLFDQILAGKLEFPAPYWDN 649 isrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* i ++ak+Li+ +L+++ + R+ta +il HPw+ fj00968 650 IT-----------DSAKELISQMLQVNVEARCTAGQILSHPWV 681 PF00069.15.ls: domain 1 of 1, from 424 to 681: score 322.4, E = 7.4e-94 *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr y++++++G G+f++V+++++++tgk++A+Kii+k +k++ +++++ fj00968 424 YKIGKVIGDGNFAVVKECIDRSTGKEFALKIIDK--AKCCGKEHLIE 468 lsEiqilkrLsHpNIvrlidvfedkdhlylVlEycegGLrvldLfdylse + E++il+r++HpNI+ l + +e+ ++l lV+E++ gG dLfd+++ fj00968 469 N-EVSILRRVKHPNIIMLVEEMETATELFLVMELVKGG----DLFDAIT- 512 trrkgpllfsedeakkialQilrgleYLHsngiiHRDLKPeNILld.nng +++++ +e++ +++ ++ +l YLH +i+HRD+KPeN+L+ + + fj00968 513 --SSTKY--TERDGSAMVYNLANALRYLHGLSIVHRDIKPENLLVCeYPD 558 vvdaflKiaDFGlAkklst.sss.lttfvGTpwYmAPEvllggngygtkv + +lK++DFGlA t ++l+t++GTp Y+APE++ +gyg kv fj00968 559 GT-KSLKLGDFGLA----TvVEGpLYTVCGTPTYVAPEIIA-ETGYGLKV 602 DvWSlGvilyelltGkpPFsgevqdsldqlqlirkilgpplefdspewds D+W++Gvi y+ll+G pPF++e ++ q l+++il ++lef+ p+wd+ fj00968 603 DIWAAGVITYILLCGFPPFRSE---NNLQEDLFDQILAGKLEFPAPYWDN 649 isrsefrrlpnlseeakdLikkcLnkDPskRltaeeilqHPwf<-* i ++ak+Li+ +L+++ + R+ta +il HPw+ fj00968 650 IT-----------DSAKELISQMLQVNVEARCTAGQILSHPWV 681 PF07714.7.fs: domain 1 of 1, from 424 to 606: score 57.8, E = 1.1e-16 *->lklgkkLGeGaFGeVykGtlkgsgdgteikVAVKtL.keigaseeei k+gk++G G+F +V +++ + +t+ + A K+++k ++ +e fj00968 424 YKIGKVIGDGNFAVVKECIDR----STGKEFALKIIdKA-KCCGKE- 464 eredFlrEAsiMkklGdHpNiVrLlGvctkegePggpg.lyiVtEymegG +E+si+++ +HpNi+ L + + e + +l++V+E+++gG fj00968 465 --HLIENEVSILRRV-KHPNIIML---VEE-MET--ATeLFLVMELVKGG 505 dLldfLrkhregrpLtlkdLlsfalQiAkGMeYLesknfvHRDLAARNcL dL d + + t d + + A+++ YL+ +vHRD+ N L fj00968 506 DLFDAITS---STKYTERDGSAMVYNLANALRYLHGLSIVHRDIKPENLL 552 Vse....nlvVKIsDFGLaRdiynddyYvrkkgggklPvkWmAPEslkyg V e +++++ K +DFGLa + + Y ++ g APE +++ fj00968 553 VCEypdgTKSLKLGDFGLATVV-EGPLY-TVCG----TPTYVAPEIIAET 596 kFtskSDVWS<-* + k D+W+ fj00968 597 GYGLKVDIWA 606 //