hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-09261733/chunk_1/iprscan-20090618-09261733.nocrc
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Query sequence: fj00968
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 351.2   6.5e-101   1
SM00537                                                 293.2    1.9e-83   2
SM00219                                                  12.9    6.2e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00537    1/2      97   188 ..     1    96 []   156.6  2.5e-42
SM00537    2/2     222   310 ..     1    96 []   136.6  2.6e-36
SM00219    1/1     424   681 ..     1   280 []    12.9  6.2e-12
SM00220    1/1     424   681 ..     1   231 []   351.2 6.5e-101

Alignments of top-scoring domains:
SM00537: domain 1 of 2, from 97 to 188: score 156.6, E = 2.5e-42
                   *->slvkpkrirvyRNGDrffkGvrlvvnrkrqfkSFeaLLqdlTelklv
                      s++k+k+ r+yRNGDr+fkG +++++++r f+SF+aLL +lT+ +l+
     fj00968    97    SEKKAKKARFYRNGDRYFKGLVFAISSDR-FRSFDALLIELTR-SLS 141  

                   vkldlpfaVRklYTldGgkkvtsldeledgDgvYVasgteEkFkkvdYg<
                   ++++lp++VR++YT+dG++kvtsldel +g ++YV++++e +F+kvdY+ 
     fj00968   142 DNVNLPQGVRTIYTIDGSRKVTSLDELLEG-ESYVCASNE-PFRKVDYT  188  

                   -*
                     
     fj00968     -    -    

SM00537: domain 2 of 2, from 222 to 310: score 136.6, E = 2.6e-36
                   *->slvkpkrirvyRNGDrffkGvrlvvnrkrqfkSFeaLLqdlTelklv
                      ++ kpk ++v+R+G++++k+vr+++n+k+ ++SFe++L+d+Te   +
     fj00968   222    DFIKPKLVTVIRSGVKPRKAVRILLNKKT-AHSFEQVLTDITE---A 264  

                   vkldlpfaVRklYTldGgkkvtsldeledgDgvYVasgteEkFkkvdYg<
                   +kld++ +V++l TldG k+vt+l++++++D+v++a+g e kF++++++ 
     fj00968   265 IKLDSG-VVKRLCTLDG-KQVTCLQDFFGDDDVFIACGPE-KFRYAQDD  310  

                   -*
                     
     fj00968     -    -    

SM00219: domain 1 of 1, from 424 to 681: score 12.9, E = 6.2e-12
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda....keeFlrE
                       + gk++G G+F +V +++ ++++ e A K + + +  +++  + +E
     fj00968   424    YKIGKVIGDGNFAVVKECIDRstgKEFALKIIDKAKccgkEHLIENE 470  

                   akiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLldyL
                    +i++++  kHpNi+ L+    +          l++vmE+++gGdL d +
     fj00968   471 VSILRRV--KHPNIIMLVEEMETA-------TELFLVMELVKGGDLFDAI 511  

                   rknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk...
                    ++ +  + +d   + +  A+  +YL+   +vHRD+   N Lv e  +++
     fj00968   512 TSSTK-YTERDGSAMVYNLANALRYLHGLSIVHRDIKPENLLVCEYPdgt 560  

                   .vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslk
                   +  K +DFGL+  ++          y +     g+ t       APE + 
     fj00968   561 kSLKLGDFGLATVVEGP-------LYTVC----GTPT-----YVAPEIIA 594  

                   dgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyR
                   +  +  k D+W+ GV  + i+  G +P    +      e+++ ++ +G  
     fj00968   595 ETGYGLKVDIWAAGVITY-ILLCGFPPFRS-EN--NLQEDLFDQILAG-K 639  

                   lpkPendl.piSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-*
                   l+ P+ + +       +d   +l++q  + + e R+t  ++ ++      
     fj00968   640 LEFPAPYWdN-----ITDSAKELISQMLQVNVEARCTAGQIlsHPWV    681  

SM00220: domain 1 of 1, from 424 to 681: score 351.2, E = 6.5e-101
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik........erilrE
                      Y+++k++G G F++V+ ++d++tg+++A+K+i++ +  +++  i++E
     fj00968   424    YKIGKVIGDGNFAVVKECIDRSTGKEFALKIIDkakccgkeHLIENE 470  

                   ikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgrrg
                   ++iL++ +HPNI+ L + +e+ ++l+lVmE++ G  GdLfd + +  +  
     fj00968   471 VSILRRvKHPNIIMLVEEMETaTELFLVMELVKG--GDLFDAITSSTK-- 516  

                   lrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds......h
                       ++E++   +++ +++aL YLH + I+HRD+KPeN+L+++ +++++ 
     fj00968   517 ----YTErDGSAMVYNLANALRYLHGLSIVHRDIKPENLLVCEypdgtkS 562  

                   vKlaDFGlArql....ttfvGTpeYmAPEvl...gYgkpavDiWSlGcil
                   +Kl+DFGlA++++++ +t++GTp Y+APE++ ++gYg  +vDiW+ G+i 
     fj00968   563 LKLGDFGLATVVegplYTVCGTPTYVAPEIIaetGYGL-KVDIWAAGVIT 611  

                   yElltGkpPFp....qldlifkkig..............SpeakdLikkl
                   y+ll+G pPF+++++ ++ +f++i+ ++ + + +++++ +++ak+Li+++
     fj00968   612 YILLCGFPPFRsennLQEDLFDQILagklefpapywdniTDSAKELISQM 661  

                   LvkdPekRlta.eaLedeldikaHPff<-*
                   L+++ e R ta+++L        HP++   
     fj00968   662 LQVNVEARCTAgQILS-------HPWV    681  

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