hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-05204174/chunk_1/iprscan-20080810-05204174.nocrc
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Query sequence: fj00971
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00514.13.fs Armadillo/beta-catenin-like repeat             190.5    3.8e-54   8
PF00514.13.ls Armadillo/beta-catenin-like repeat             185.9    8.8e-53   6
PF02985.12.ls HEAT repeat                                     22.9      0.001   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00514.13.ls   1/6     498   538 ..     1    41 []    20.5   0.0055
PF00514.13.ls   2/6     540   580 ..     1    41 []    40.0  7.8e-09
PF00514.13.fs   2/8     540   580 ..     1    41 []    38.0    1e-09
PF00514.13.ls   3/6     584   625 ..     1    41 []    47.2  5.1e-11
PF00514.13.fs   3/8     584   625 ..     1    41 []    45.2  9.4e-12
PF00514.13.fs   6/8     793   834 ..     1    41 []    34.6  9.1e-09
PF00514.13.ls   4/6     793   834 ..     1    41 []    36.6  7.9e-08
PF00514.13.fs   7/8     840   880 ..     1    41 []    32.3  4.1e-08
PF00514.13.ls   5/6     840   880 ..     1    41 []    34.3    4e-07

Alignments of top-scoring domains:
PF00514.13.ls: domain 1 of 6, from 498 to 538: score 20.5, E = 0.0055
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                        ++++  ++   lp  +q+L+++ ++vq +Aa+ L +L++   
     fj00971   498    QKDPREFGWRDPELPEVIQMLQHQFPSVQSNAAAYLQHLCF    538  

PF00514.13.ls: domain 2 of 6, from 540 to 580: score 40.0, E = 7.8e-09
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      +++ k +++++G++++Lv+LL+++ +ev + A++AL+NL+    
     fj00971   540    DNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVY    580  

PF00514.13.fs: domain 2 of 8, from 540 to 580: score 38.0, E = 1e-09
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      +++ k +++++G++++Lv+LL+++ +ev + A++AL+NL+    
     fj00971   540    DNKIKAEIRRQGGIQLLVDLLDHRMTEVHRSACGALRNLVY    580  

PF00514.13.ls: domain 3 of 6, from 584 to 625: score 47.2, E = 5.1e-11
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                      n++nk a+ ++G++p+Lv+LL++++d e++e ++++L+NL++   
     fj00971   584    NDDNKIALKNCGGIPALVRLLRkTTDLEIRELVTGVLWNLSS    625  

PF00514.13.fs: domain 3 of 8, from 584 to 625: score 45.2, E = 9.4e-12
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                      n++nk a+ ++G++p+Lv+LL++++d e++e ++++L+NL++   
     fj00971   584    NDDNKIALKNCGGIPALVRLLRkTTDLEIRELVTGVLWNLSS    625  

PF00514.13.fs: domain 6 of 8, from 793 to 834: score 34.6, E = 9.1e-09
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                      +p+ +q++++  +++p + LLs++++++++e Aa+AL NLaa   
     fj00971   793    PPKGIQMLWHPSIVKPYLTLLSeCSNPDTLEGAAGALQNLAA    834  

PF00514.13.ls: domain 4 of 6, from 793 to 834: score 36.6, E = 7.9e-08
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                      +p+ +q++++  +++p + LLs++++++++e Aa+AL NLaa   
     fj00971   793    PPKGIQMLWHPSIVKPYLTLLSeCSNPDTLEGAAGALQNLAA    834  

PF00514.13.fs: domain 7 of 8, from 840 to 880: score 32.3, E = 4.1e-08
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      +   + av+++ +lp+Lv+LL+ ++ +v++++a+AL+N+a    
     fj00971   840    SVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMAL    880  

PF00514.13.ls: domain 5 of 6, from 840 to 880: score 34.3, E = 4e-07
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      +   + av+++ +lp+Lv+LL+ ++ +v++++a+AL+N+a    
     fj00971   840    SVYIRAAVRKEKGLPILVELLRIDNDRVVCAVATALRNMAL    880  

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