hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-05204174/chunk_1/iprscan-20080810-05204174.nocrc
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Query sequence: fj00971
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00185                                                 194.5    9.5e-54   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00185    1/7     540   580 ..     1    38 []    43.7  2.4e-08
SM00185    2/7     584   625 ..     1    38 []    47.7  1.5e-09
SM00185    3/7     626   683 ..     1    38 []    10.9       20
SM00185    4/7     685   732 ..     1    38 []     8.9       36
SM00185    5/7     793   834 ..     1    38 []    14.7      6.4
SM00185    6/7     840   880 ..     1    38 []    39.8  3.6e-07
SM00185    7/7     933   977 ..     1    38 []    28.8  0.00077

Alignments of top-scoring domains:
SM00185: domain 1 of 7, from 540 to 580: score 43.7, E = 2.4e-08
                   *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-*
                      +++ k++++++Gg+++Lv+LL+++  ev + A++aL+Nl++   
     fj00971   540    DNKIKAEIRRQGGIQLLVDLLdhrMTEVHRSACGALRNLVY    580  

SM00185: domain 2 of 7, from 584 to 625: score 47.7, E = 1.5e-09
                   *->ndenkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-*
                      nd+nk+a+ ++Gg+paLv+LL++++d e+++ ++++L+Nl+s   
     fj00971   584    NDDNKIALKNCGGIPALVRLLrkttDLEIRELVTGVLWNLSS    625  

SM00185: domain 3 of 7, from 626 to 683: score 10.9, E = 20
                   *->ndenkqavvdaGglpaLvqLL.....................deevq
                      +d  k+ +++  +l  L + +  ++++ ++++ +++++ + ++ +v+
     fj00971   626    CDALKMPIIQD-ALAVLTNAViiphsgwensplqddrkiqlhSSQVL 671  

                   keAawaLsNlas<-*
                   ++A+++L+N++s   
     fj00971   672 RNATGCLRNVSS    683  

SM00185: domain 4 of 7, from 685 to 732: score 8.9, E = 36
                   *->ndenkqavvdaG.glpaLvqLL.........deevqkeAawaLsNla
                       +e++  ++++ +  +aL+  +++  ++++ d + ++++++ L+Nl+
     fj00971   685    GEEARRRMRECDgLTDALLYVIqsalgsseiDSKTVENCVCILRNLS 731  

                   s<-*
                   +   
     fj00971   732 Y    732  

SM00185: domain 5 of 7, from 793 to 834: score 14.7, E = 6.4
                   *->ndenkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-*
                      +++ +q++ +  ++++ + LL++ ++++ ++ Aa+aL Nla+   
     fj00971   793    PPKGIQMLWHPSIVKPYLTLLsecsNPDTLEGAAGALQNLAA    834  

SM00185: domain 6 of 7, from 840 to 880: score 39.8, E = 3.6e-07
                   *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-*
                      +   ++av++++glp+Lv+LL+ ++++v++++a aL+N+a    
     fj00971   840    SVYIRAAVRKEKGLPILVELLridNDRVVCAVATALRNMAL    880  

SM00185: domain 7 of 7, from 933 to 977: score 28.8, E = 0.00077
                   *->ndenkqavvdaGglpaLvqLL.......deevqkeAawaLsNlas<-
                      n en++a++daGg+++Lv   ++++++++++v+k+A  +L  +++  
     fj00971   933    NMENAKALRDAGGIEKLVGISkskgdkhSPKVVKAASQVLNSMWQ   977  

                   *
                    
     fj00971     -   -    

//