hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-05270988/chunk_1/iprscan-20080810-05270988.nocrc
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Query sequence: fj01440
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF07701.4.ls  Heme NO binding associated                409.5   4.4e-120   1
PF07701.4.fs  Heme NO binding associated                407.8   1.5e-119   1
PF00211.10.ls Adenylate and Guanylate cyclase catalyt   327.8    1.7e-95   1
PF00211.10.fs Adenylate and Guanylate cyclase catalyt   326.0    6.2e-95   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF07701.4.fs    1/1     261   462 ..     1   254 []   407.8 1.5e-119
PF07701.4.ls    1/1     261   462 ..     1   254 []   409.5 4.4e-120
PF00211.10.fs   1/1     463   650 ..     1   223 []   326.0  6.2e-95
PF00211.10.ls   1/1     463   650 ..     1   223 []   327.8  1.7e-95

Alignments of top-scoring domains:
PF07701.4.fs: domain 1 of 1, from 261 to 462: score 407.8, E = 1.5e-119
                   *->slpsdlkislstFckaFPFHiifDedLkivQaGeglrrllplnNvnv
                      + +s l i++s+Fck+FPFH++fD+d+ i+Q+G+g+rrl++      
     fj01440   261    KPQSSLVIPTSLFCKTFPFHFMFDKDMTILQFGNGIRRLMN------ 301  

                   kellrqglkvtdvFeivRPkgipltFegIlsriNtvFvlrlkrgsmnvet
                   +++++++++++++Fei  Pk i++tF+gI++++N++Fv+r++r  +++ +
     fj01440   302 RRDFQGKPNFEEYFEILTPK-INQTFSGIMTMLNMQFVVRVRR--WDNSV 348  

                   kditvqlnditfDkvSlekesqametkeelaakaltQivrneseslksLe
                   k                                           s+++++
     fj01440   349 K------------------------------------------KSSRVMD 356  

                   LKGQMiyipEsnsiLFLCSPsVdnLdELtgrGLYLSDIPlHDATRDlILl
                   LKGQMiyi Es +iLFL+SP+Vd+L+++tgrGLYLSDIP+H+A RD++L+
     fj01440   357 LKGQMIYIVESSAILFLGSPCVDRLEDFTGRGLYLSDIPIHNALRDVVLI 406  

                   geQrraqdeLkkrlEeklkekLekmtraLeeEKkKTddLLysilPpsVAq
                   geQ+raqd+Lkkrl+ klk++Le++++aLeeEKkKT+dLL+si+P++VAq
     fj01440   407 GEQARAQDGLKKRLG-KLKATLEQAHQALEEEKKKTVDLLCSIFPCEVAQ 455  

                   qLrqGes<-*
                   qL+qG+    
     fj01440   456 QLWQGQV    462  

PF07701.4.ls: domain 1 of 1, from 261 to 462: score 409.5, E = 4.4e-120
                   *->slpsdlkislstFckaFPFHiifDedLkivQaGeglrrllplnNvnv
                      + +s l i++s+Fck+FPFH++fD+d+ i+Q+G+g+rrl++      
     fj01440   261    KPQSSLVIPTSLFCKTFPFHFMFDKDMTILQFGNGIRRLMN------ 301  

                   kellrqglkvtdvFeivRPkgipltFegIlsriNtvFvlrlkrgsmnvet
                   +++++++++++++Fei  Pk i++tF+gI++++N++Fv+r++r  +++ +
     fj01440   302 RRDFQGKPNFEEYFEILTPK-INQTFSGIMTMLNMQFVVRVRR--WDNSV 348  

                   kditvqlnditfDkvSlekesqametkeelaakaltQivrneseslksLe
                   k                                           s+++++
     fj01440   349 K------------------------------------------KSSRVMD 356  

                   LKGQMiyipEsnsiLFLCSPsVdnLdELtgrGLYLSDIPlHDATRDlILl
                   LKGQMiyi Es +iLFL+SP+Vd+L+++tgrGLYLSDIP+H+A RD++L+
     fj01440   357 LKGQMIYIVESSAILFLGSPCVDRLEDFTGRGLYLSDIPIHNALRDVVLI 406  

                   geQrraqdeLkkrlEeklkekLekmtraLeeEKkKTddLLysilPpsVAq
                   geQ+raqd+Lkkrl+ klk++Le++++aLeeEKkKT+dLL+si+P++VAq
     fj01440   407 GEQARAQDGLKKRLG-KLKATLEQAHQALEEEKKKTVDLLCSIFPCEVAQ 455  

                   qLrqGes<-*
                   qL+qG+    
     fj01440   456 QLWQGQV    462  

PF00211.10.fs: domain 1 of 1, from 463 to 650: score 326.0, E = 6.2e-95
                   *->vyaqrydnVtilFaDIvGFTalssrhsvNngpeevvrlLNdlytrFD
                      v+a+ + nVt+lF+DIvGFTa++s++s    p++v+++LN+lytrFD
     fj01440   463    VQAKKFSNVTMLFSDIVGFTAICSQCS----PLQVITMLNALYTRFD 505  

                   eLldehkfgvyKvKTIGDaYMvasGlppaadqtkLakklqldsaaHaakl
                    +++e   +vyKv+TIGDaY+va+Gl+++             s  Ha+++
     fj01440   506 QQCGEL--DVYKVETIGDAYCVAGGLHKE-------------SDTHAVQI 540  

                   admALdmveaiqevnvehanrepPtvLyrGlrvRiGiHtGpVvaGviGlt
                   a mAL+m+e+ +ev+++h++  p       +++RiG+H+G+V+aGv+G  
     fj01440   541 ALMALKMMELSDEVMSPHGE--P-------IKMRIGLHSGSVFAGVVG-- 579  

                   akrprYdvwGdTVNlASRmEStGvpgsekIhvseetyrlLkeeesfefef
                    k+prY+++G+ V+lA+++ES++vp+  kI+vs++tyrlLk++ +f+f+ 
     fj01440   580 VKMPRYCLFGNNVTLANKFESCSVPR--KINVSPTTYRLLKDCPGFVFTP 627  

                   aleprgeveVkGkgkp.GeietYfLkg<-*
                     ++r e  ++ +++++++ +++fL +   
     fj01440   628 --RSREE--LPPNFPSeIPGICHFLDA    650  

PF00211.10.ls: domain 1 of 1, from 463 to 650: score 327.8, E = 1.7e-95
                   *->vyaqrydnVtilFaDIvGFTalssrhsvNngpeevvrlLNdlytrFD
                      v+a+ + nVt+lF+DIvGFTa++s++s    p++v+++LN+lytrFD
     fj01440   463    VQAKKFSNVTMLFSDIVGFTAICSQCS----PLQVITMLNALYTRFD 505  

                   eLldehkfgvyKvKTIGDaYMvasGlppaadqtkLakklqldsaaHaakl
                    +++e   +vyKv+TIGDaY+va+Gl+++             s  Ha+++
     fj01440   506 QQCGEL--DVYKVETIGDAYCVAGGLHKE-------------SDTHAVQI 540  

                   admALdmveaiqevnvehanrepPtvLyrGlrvRiGiHtGpVvaGviGlt
                   a mAL+m+e+ +ev+++h++  p       +++RiG+H+G+V+aGv+G  
     fj01440   541 ALMALKMMELSDEVMSPHGE--P-------IKMRIGLHSGSVFAGVVG-- 579  

                   akrprYdvwGdTVNlASRmEStGvpgsekIhvseetyrlLkeeesfefef
                    k+prY+++G+ V+lA+++ES++vp+  kI+vs++tyrlLk++ +f+f+ 
     fj01440   580 VKMPRYCLFGNNVTLANKFESCSVPR--KINVSPTTYRLLKDCPGFVFTP 627  

                   aleprgeveVkGkgkp.GeietYfLkg<-*
                     ++r e  ++ +++++++ +++fL +   
     fj01440   628 --RSREE--LPPNFPSeIPGICHFLDA    650  

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