hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-05270988/chunk_1/iprscan-20080810-05270988.nocrc
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Query sequence: fj01440
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00044                                                 354.8   5.4e-102   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00044    1/1     436   627 ..     1   231 []   354.8 5.4e-102

Alignments of top-scoring domains:
SM00044: domain 1 of 1, from 436 to 627: score 354.8, E = 5.4e-102
                   *->eekkktdrLLyqlLPasvAeslkegrepvpaesydsVTilFsDIvgF
                      eekkkt  LL++++P +vA++l++g+ +v+a+ +++VT+lFsDIvgF
     fj01440   436    EEKKKTVDLLCSIFPCEVAQQLWQGQ-VVQAKKFSNVTMLFSDIVGF 481  

                   TslcsastPeqvvtlLndlysrFDriidrhggsrvvvYKVeTiGDaYMVv
                   T++cs+++P+qv+t+Ln ly+rFD+++++ +     vYKVeTiGDaY+V+
     fj01440   482 TAICSQCSPLQVITMLNALYTRFDQQCGELD-----VYKVETIGDAYCVA 526  

                   sGlPeeaetsaesklkddglteawcfavqhaeliadeaLdmveslktvkv
                   +Gl+ e                       ha++ia++aL+m+e +++v++
     fj01440   527 GGLHKESD--------------------THAVQIALMALKMMELSDEVMS 556  

                   phrkgelpgeglrvRiGiHtGpVvaGVvGlrmpRYclFGdTVNlASRmES
                   ph      ge++++RiG+H+G+V+aGVvG++mpRYclFG+ V+lA+++ES
     fj01440   557 PH------GEPIKMRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFES 600  

                   tgdpgqIqvSeetyslLqlgqaerrekggfefee<-*
                   +++p++I+vS++ty+lL       ++++gf+f +   
     fj01440   601 CSVPRKINVSPTTYRLL-------KDCPGFVFTP    627  

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