hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-05333193/chunk_1/iprscan-20080810-05333193.nocrc
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Query sequence: fj01654
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  36.9    2.8e-06   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/4     110   148 ..     1    46 []    12.2      5.7
SM00320    2/4     175   215 ..     1    46 []     6.8       41
SM00320    3/4     257   296 ..     1    46 []    13.5      3.6
SM00320    4/4     307   347 ..     1    46 []     4.4    1e+02

Alignments of top-scoring domains:
SM00320: domain 1 of 4, from 110 to 148: score 12.2, E = 5.7
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++ l++     +   +++v f+++g      +lla+g++ g + ++
     fj01654   110    TpSRLAVPL-PAD--IISTVEFNHTG------ELLATGDkGGRVVIF 147  

                   d<-*
                       
     fj01654   148 Q    148  

SM00320: domain 2 of 4, from 175 to 215: score 6.8, E = 41
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                      +   l++l+  +    ++ +++ p  ++    + l+s  D+ti+lW+
     fj01654   175    EfDYLKSLE-IEE--KINKIKWLPQQNA---AHSLLSTNDKTIKLWK 215  

                   <-*
                      
     fj01654     -     -    

SM00320: domain 3 of 4, from 257 to 296: score 13.5, E = 3.6
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgsDgtirlW
                      + ++ r++ +gHt    ++s+++++d       +   s++D  i lW
     fj01654   257    EvSPRRIFAnGHTY--HINSISVNSDC------ETYMSADDLRINLW 295  

                   d<-*
                   +   
     fj01654   296 H    296  

SM00320: domain 4 of 4, from 307 to 347: score 4.4, E = 1e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +   + ++  t    +t+  f+p++      nl++ +s+ g++rl 
     fj01654   307    VdIKPANMEDLTE--VITASEFHPHH-----CNLFVYSSsKGSLRLC 346  

                   d<-*
                   d   
     fj01654   347 D    347  

//