# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj01677.fasta.nr -Q fj01677.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj01677, 490 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6823419 sequences Expectation_n fit: rho(ln(x))= 5.5040+/-0.000194; mu= 10.2581+/- 0.011 mean_var=80.0587+/-15.989, 0's: 39 Z-trim: 41 B-trim: 4071 in 2/66 Lambda= 0.143341 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|68533083|dbj|BAE06096.1| STAU2 variant protein ( 490) 3238 679.1 5.9e-193 gi|168270864|dbj|BAG10225.1| double-stranded RNA-b ( 479) 3155 662.0 8.5e-188 gi|6634457|emb|CAB64341.1| 39k3 protein [Homo sapi ( 479) 3151 661.1 1.5e-187 gi|55729500|emb|CAH91481.1| hypothetical protein [ ( 479) 3150 660.9 1.7e-187 gi|23507041|gb|AAN37927.1|AF459098_1 double-strand ( 538) 3146 660.1 3.4e-187 gi|109086695|ref|XP_001085268.1| PREDICTED: staufe ( 479) 3145 659.9 3.6e-187 gi|114620500|ref|XP_001165533.1| PREDICTED: hypoth ( 479) 3145 659.9 3.6e-187 gi|109086687|ref|XP_001084321.1| PREDICTED: staufe ( 517) 3145 659.9 3.8e-187 gi|114620492|ref|XP_001165189.1| PREDICTED: hypoth ( 517) 3145 659.9 3.8e-187 gi|109086681|ref|XP_001084443.1| PREDICTED: staufe ( 576) 3145 660.0 4.1e-187 gi|109086685|ref|XP_001084686.1| PREDICTED: staufe ( 538) 3140 658.9 8e-187 gi|114620490|ref|XP_519808.2| PREDICTED: staufen h ( 538) 3140 658.9 8e-187 gi|158261305|dbj|BAF82830.1| unnamed protein produ ( 479) 3133 657.4 2e-186 gi|114620510|ref|XP_001165689.1| PREDICTED: staufe ( 485) 3123 655.4 8.5e-186 gi|119607409|gb|EAW87003.1| staufen, RNA binding p ( 549) 3116 653.9 2.5e-185 gi|55726277|emb|CAH89910.1| hypothetical protein [ ( 491) 3115 653.7 2.7e-185 gi|73919458|sp|Q9NUL3|STAU2_HUMAN Double-stranded ( 570) 3111 652.9 5.4e-185 gi|73999252|ref|XP_535103.2| PREDICTED: similar to ( 479) 3110 652.7 5.4e-185 gi|114620494|ref|XP_001165466.1| PREDICTED: hypoth ( 511) 3110 652.7 5.7e-185 gi|109086689|ref|XP_001084917.1| PREDICTED: staufe ( 511) 3110 652.7 5.7e-185 gi|114620488|ref|XP_001165116.1| PREDICTED: hypoth ( 570) 3105 651.7 1.3e-184 gi|109086683|ref|XP_001084562.1| PREDICTED: staufe ( 570) 3105 651.7 1.3e-184 gi|73999250|ref|XP_849924.1| PREDICTED: similar to ( 540) 3091 648.8 9e-184 gi|151554636|gb|AAI49988.1| STAU2 protein [Bos tau ( 538) 3087 647.9 1.6e-183 gi|73999248|ref|XP_860148.1| PREDICTED: similar to ( 544) 3083 647.1 2.9e-183 gi|19264083|gb|AAH25118.1| Stau2 protein [Mus musc ( 479) 3054 641.1 1.7e-181 gi|23507045|gb|AAN37929.1|AF459100_1 double-strand ( 538) 3049 640.1 3.7e-181 gi|149721312|ref|XP_001491884.1| PREDICTED: simila ( 569) 3046 639.5 6e-181 gi|47679379|gb|AAT36670.1| staufen2 spliceform SS ( 480) 3045 639.2 6e-181 gi|47679381|gb|AAT36671.1| staufen2 spliceform SL ( 539) 3040 638.2 1.4e-180 gi|73919459|sp|Q8CJ67|STAU2_MOUSE Double-stranded ( 570) 3014 632.9 5.9e-179 gi|47679383|gb|AAT36672.1| staufen2 spliceform LS ( 512) 3010 632.0 9.6e-179 gi|19526446|gb|AAL89719.1|AF483621_1 RNA-binding p ( 512) 3005 631.0 2e-178 gi|73919460|sp|Q68SB1|STAU2_RAT Double-stranded RN ( 571) 3005 631.0 2.1e-178 gi|19526444|gb|AAL89718.1|AF483620_1 RNA-binding p ( 571) 3000 630.0 4.4e-178 gi|16307507|gb|AAH10300.1| Stau2 protein [Mus musc ( 533) 2991 628.1 1.5e-177 gi|126321042|ref|XP_001367821.1| PREDICTED: hypoth ( 569) 2610 549.3 8.3e-154 gi|149060895|gb|EDM11505.1| rCG30397, isoform CRA_ ( 408) 2587 544.5 1.7e-152 gi|149060896|gb|EDM11506.1| rCG30397, isoform CRA_ ( 467) 2582 543.5 3.9e-152 gi|73919457|sp|Q7ZW47|STAU2_BRARE Double-stranded ( 606) 2376 500.9 3.2e-139 gi|28277474|gb|AAH45292.1| Staufen, RNA binding pr ( 653) 2376 501.0 3.4e-139 gi|148682396|gb|EDL14343.1| staufen (RNA binding p ( 370) 2339 493.1 4.4e-137 gi|148682397|gb|EDL14344.1| staufen (RNA binding p ( 402) 2304 485.9 7e-135 gi|50417953|gb|AAH77753.1| Stau2-B-prov protein [X ( 644) 2281 481.3 2.8e-133 gi|83318414|gb|AAI08851.1| Stau2-b protein [Xenopu ( 689) 2281 481.3 2.9e-133 gi|28302215|gb|AAH46732.1| Stau2-a protein [Xenopu ( 685) 2238 472.4 1.4e-130 gi|53130432|emb|CAG31545.1| hypothetical protein [ ( 472) 2111 446.1 8.3e-123 gi|73919461|sp|Q5M7M7|STAU2_XENTR Double-stranded ( 624) 2059 435.4 1.8e-119 gi|50949968|emb|CAH10527.1| hypothetical protein [ ( 314) 2027 428.6 1e-117 gi|73992225|ref|XP_867078.1| PREDICTED: similar to ( 577) 1384 295.8 1.8e-77 >>gi|68533083|dbj|BAE06096.1| STAU2 variant protein [Hom (490 aa) initn: 3238 init1: 3238 opt: 3238 Z-score: 3619.3 bits: 679.1 E(): 5.9e-193 Smith-Waterman score: 3238; 100.000% identity (100.000% similar) in 490 aa overlap (1-490:1-490) 10 20 30 40 50 60 fj0167 GIQQFGQYCLNMLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 GIQQFGQYCLNMLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK 10 20 30 40 50 60 70 80 90 100 110 120 fj0167 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP 70 80 90 100 110 120 130 140 150 160 170 180 fj0167 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDD 130 140 150 160 170 180 190 200 210 220 230 240 fj0167 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK 190 200 210 220 230 240 250 260 270 280 290 300 fj0167 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE 250 260 270 280 290 300 310 320 330 340 350 360 fj0167 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL 310 320 330 340 350 360 370 380 390 400 410 420 fj0167 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP 370 380 390 400 410 420 430 440 450 460 470 480 fj0167 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|685 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE 430 440 450 460 470 480 490 fj0167 YLARIQGFQV :::::::::: gi|685 YLARIQGFQV 490 >>gi|168270864|dbj|BAG10225.1| double-stranded RNA-bindi (479 aa) initn: 3155 init1: 3155 opt: 3155 Z-score: 3526.7 bits: 662.0 E(): 8.5e-188 Smith-Waterman score: 3155; 100.000% identity (100.000% similar) in 479 aa overlap (12-490:1-479) 10 20 30 40 50 60 fj0167 GIQQFGQYCLNMLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK ::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK 10 20 30 40 70 80 90 100 110 120 fj0167 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP 50 60 70 80 90 100 130 140 150 160 170 180 fj0167 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDD 110 120 130 140 150 160 190 200 210 220 230 240 fj0167 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK 170 180 190 200 210 220 250 260 270 280 290 300 fj0167 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE 230 240 250 260 270 280 310 320 330 340 350 360 fj0167 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL 290 300 310 320 330 340 370 380 390 400 410 420 fj0167 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP 350 360 370 380 390 400 430 440 450 460 470 480 fj0167 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE 410 420 430 440 450 460 490 fj0167 YLARIQGFQV :::::::::: gi|168 YLARIQGFQV 470 >>gi|6634457|emb|CAB64341.1| 39k3 protein [Homo sapiens] (479 aa) initn: 3151 init1: 3151 opt: 3151 Z-score: 3522.2 bits: 661.1 E(): 1.5e-187 Smith-Waterman score: 3151; 99.791% identity (100.000% similar) in 479 aa overlap (12-490:1-479) 10 20 30 40 50 60 fj0167 GIQQFGQYCLNMLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK ::::::::::::::::::::::::::::::::::::::::::::::::: gi|663 MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK 10 20 30 40 70 80 90 100 110 120 fj0167 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|663 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP 50 60 70 80 90 100 130 140 150 160 170 180 fj0167 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|663 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDD 110 120 130 140 150 160 190 200 210 220 230 240 fj0167 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|663 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK 170 180 190 200 210 220 250 260 270 280 290 300 fj0167 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|663 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE 230 240 250 260 270 280 310 320 330 340 350 360 fj0167 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|663 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL 290 300 310 320 330 340 370 380 390 400 410 420 fj0167 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|663 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP 350 360 370 380 390 400 430 440 450 460 470 480 fj0167 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|663 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE 410 420 430 440 450 460 490 fj0167 YLARIQGFQV :::::::::: gi|663 YLARIQGFQV 470 >>gi|55729500|emb|CAH91481.1| hypothetical protein [Pong (479 aa) initn: 3150 init1: 3150 opt: 3150 Z-score: 3521.1 bits: 660.9 E(): 1.7e-187 Smith-Waterman score: 3150; 99.582% identity (100.000% similar) in 479 aa overlap (12-490:1-479) 10 20 30 40 50 60 fj0167 GIQQFGQYCLNMLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK ::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK 10 20 30 40 70 80 90 100 110 120 fj0167 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP 50 60 70 80 90 100 130 140 150 160 170 180 fj0167 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|557 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDD 110 120 130 140 150 160 190 200 210 220 230 240 fj0167 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK 170 180 190 200 210 220 250 260 270 280 290 300 fj0167 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE :::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::: gi|557 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTVVKAGPEYGQGMNPISRLAQIQQAKKE 230 240 250 260 270 280 310 320 330 340 350 360 fj0167 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL 290 300 310 320 330 340 370 380 390 400 410 420 fj0167 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP 350 360 370 380 390 400 430 440 450 460 470 480 fj0167 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE 410 420 430 440 450 460 490 fj0167 YLARIQGFQV :::::::::: gi|557 YLARIQGFQV 470 >>gi|23507041|gb|AAN37927.1|AF459098_1 double-stranded R (538 aa) initn: 3146 init1: 3146 opt: 3146 Z-score: 3515.9 bits: 660.1 E(): 3.4e-187 Smith-Waterman score: 3146; 99.791% identity (100.000% similar) in 478 aa overlap (12-489:1-478) 10 20 30 40 50 60 fj0167 GIQQFGQYCLNMLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK ::::::::::::::::::::::::::::::::::::::::::::::::: gi|235 MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK 10 20 30 40 70 80 90 100 110 120 fj0167 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|235 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP 50 60 70 80 90 100 130 140 150 160 170 180 fj0167 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|235 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDD 110 120 130 140 150 160 190 200 210 220 230 240 fj0167 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|235 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK 170 180 190 200 210 220 250 260 270 280 290 300 fj0167 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|235 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE 230 240 250 260 270 280 310 320 330 340 350 360 fj0167 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|235 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL 290 300 310 320 330 340 370 380 390 400 410 420 fj0167 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|235 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP 350 360 370 380 390 400 430 440 450 460 470 480 fj0167 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|235 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE 410 420 430 440 450 460 490 fj0167 YLARIQGFQV ::::::::: gi|235 YLARIQGFQAALSALKQFSEQGLDPIDGAMNIEKGSLEKQAKHLREKADNNQAPPGSIAQ 470 480 490 500 510 520 >>gi|109086695|ref|XP_001085268.1| PREDICTED: staufen, R (479 aa) initn: 3145 init1: 3145 opt: 3145 Z-score: 3515.5 bits: 659.9 E(): 3.6e-187 Smith-Waterman score: 3145; 99.582% identity (100.000% similar) in 479 aa overlap (12-490:1-479) 10 20 30 40 50 60 fj0167 GIQQFGQYCLNMLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK ::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK 10 20 30 40 70 80 90 100 110 120 fj0167 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP 50 60 70 80 90 100 130 140 150 160 170 180 fj0167 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDD :::::::::::::::::::::::::::::::::::::::::::::::::.::::::.::: gi|109 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDD 110 120 130 140 150 160 190 200 210 220 230 240 fj0167 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK 170 180 190 200 210 220 250 260 270 280 290 300 fj0167 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE 230 240 250 260 270 280 310 320 330 340 350 360 fj0167 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL 290 300 310 320 330 340 370 380 390 400 410 420 fj0167 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP 350 360 370 380 390 400 430 440 450 460 470 480 fj0167 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE 410 420 430 440 450 460 490 fj0167 YLARIQGFQV :::::::::: gi|109 YLARIQGFQV 470 >>gi|114620500|ref|XP_001165533.1| PREDICTED: hypothetic (479 aa) initn: 3145 init1: 3145 opt: 3145 Z-score: 3515.5 bits: 659.9 E(): 3.6e-187 Smith-Waterman score: 3145; 99.582% identity (100.000% similar) in 479 aa overlap (12-490:1-479) 10 20 30 40 50 60 fj0167 GIQQFGQYCLNMLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK ::::::::::::::::::::::::::::::::::.:::::::::::::: gi|114 MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVASKALTESTLPKPVQK 10 20 30 40 70 80 90 100 110 120 fj0167 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP 50 60 70 80 90 100 130 140 150 160 170 180 fj0167 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|114 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDD 110 120 130 140 150 160 190 200 210 220 230 240 fj0167 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK 170 180 190 200 210 220 250 260 270 280 290 300 fj0167 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE 230 240 250 260 270 280 310 320 330 340 350 360 fj0167 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL 290 300 310 320 330 340 370 380 390 400 410 420 fj0167 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP 350 360 370 380 390 400 430 440 450 460 470 480 fj0167 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE 410 420 430 440 450 460 490 fj0167 YLARIQGFQV :::::::::: gi|114 YLARIQGFQV 470 >>gi|109086687|ref|XP_001084321.1| PREDICTED: staufen, R (517 aa) initn: 3145 init1: 3145 opt: 3145 Z-score: 3515.0 bits: 659.9 E(): 3.8e-187 Smith-Waterman score: 3145; 99.582% identity (100.000% similar) in 479 aa overlap (12-490:1-479) 10 20 30 40 50 60 fj0167 GIQQFGQYCLNMLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK ::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK 10 20 30 40 70 80 90 100 110 120 fj0167 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP 50 60 70 80 90 100 130 140 150 160 170 180 fj0167 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDD :::::::::::::::::::::::::::::::::::::::::::::::::.::::::.::: gi|109 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDD 110 120 130 140 150 160 190 200 210 220 230 240 fj0167 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK 170 180 190 200 210 220 250 260 270 280 290 300 fj0167 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE 230 240 250 260 270 280 310 320 330 340 350 360 fj0167 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL 290 300 310 320 330 340 370 380 390 400 410 420 fj0167 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP 350 360 370 380 390 400 430 440 450 460 470 480 fj0167 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE 410 420 430 440 450 460 490 fj0167 YLARIQGFQV :::::::::: gi|109 YLARIQGFQVHYCDRQSGKECVTCLTLAPVQMTFHAIGSSIEASHDQV 470 480 490 500 510 >>gi|114620492|ref|XP_001165189.1| PREDICTED: hypothetic (517 aa) initn: 3145 init1: 3145 opt: 3145 Z-score: 3515.0 bits: 659.9 E(): 3.8e-187 Smith-Waterman score: 3145; 99.582% identity (100.000% similar) in 479 aa overlap (12-490:1-479) 10 20 30 40 50 60 fj0167 GIQQFGQYCLNMLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK ::::::::::::::::::::::::::::::::::.:::::::::::::: gi|114 MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVASKALTESTLPKPVQK 10 20 30 40 70 80 90 100 110 120 fj0167 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP 50 60 70 80 90 100 130 140 150 160 170 180 fj0167 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|114 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDMDDD 110 120 130 140 150 160 190 200 210 220 230 240 fj0167 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK 170 180 190 200 210 220 250 260 270 280 290 300 fj0167 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE 230 240 250 260 270 280 310 320 330 340 350 360 fj0167 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL 290 300 310 320 330 340 370 380 390 400 410 420 fj0167 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP 350 360 370 380 390 400 430 440 450 460 470 480 fj0167 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE 410 420 430 440 450 460 490 fj0167 YLARIQGFQV :::::::::: gi|114 YLARIQGFQVHYCDRQSGKECVTCLTLAPVQMTFHAIGSSIEASHDQV 470 480 490 500 510 >>gi|109086681|ref|XP_001084443.1| PREDICTED: staufen ho (576 aa) initn: 3145 init1: 3145 opt: 3145 Z-score: 3514.4 bits: 660.0 E(): 4.1e-187 Smith-Waterman score: 3145; 99.582% identity (100.000% similar) in 479 aa overlap (12-490:1-479) 10 20 30 40 50 60 fj0167 GIQQFGQYCLNMLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK ::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MLQINQMFSVQLSLGEQTWESEGSSIKKAQQAVANKALTESTLPKPVQK 10 20 30 40 70 80 90 100 110 120 fj0167 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PPKSNVNNNPGSITPTVELNGLAMKRGEPAIYRPLDPKPFPNYRANYNFRGMYNQRYHCP 50 60 70 80 90 100 130 140 150 160 170 180 fj0167 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQNGESGKDVDDD :::::::::::::::::::::::::::::::::::::::::::::::::.::::::.::: gi|109 VPKIFYVQLTVGNNEFFGEGKTRQAARHNAAMKALQALQNEPIPERSPQSGESGKDMDDD 110 120 130 140 150 160 190 200 210 220 230 240 fj0167 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KDANKSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGEFSAEGEGNSKKLSK 170 180 190 200 210 220 250 260 270 280 290 300 fj0167 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KRAATTVLQELKKLPPLPVVEKPKLFFKKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKE 230 240 250 260 270 280 310 320 330 340 350 360 fj0167 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEAMLLQLGYKASTNL 290 300 310 320 330 340 370 380 390 400 410 420 fj0167 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QDQLEKTGENKGWSGPKPGFPEPTNNTPKGILHLSPDVYQEMEASRHKVISGTTLGYLSP 350 360 370 380 390 400 430 440 450 460 470 480 fj0167 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KDMNQPSSSFFSISPTSNSSATIARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLE 410 420 430 440 450 460 490 fj0167 YLARIQGFQV :::::::::: gi|109 YLARIQGFQVHYCDRQSGKECVTCLTLAPVQMTFHAIGSSIEASHDQAALSALKQFSEQG 470 480 490 500 510 520 490 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 05:37:13 2008 done: Sun Aug 10 05:39:36 2008 Total Scan time: 872.160 Total Display time: 0.150 Function used was FASTA [version 34.26.5 April 26, 2007]