hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-05393717/chunk_1/iprscan-20080810-05393717.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: fj01677
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00358                                                 205.4    5.1e-57   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00358    1/3      75   159 ..     1    68 []    40.0  3.1e-07
SM00358    2/3     187   252 ..     1    68 []    76.6  3.1e-18
SM00358    3/3     287   353 ..     1    68 []    88.8  6.5e-22

Alignments of top-scoring domains:
SM00358: domain 1 of 3, from 75 to 159: score 40.0, E = 3.1e-07
                   *->pkslLqElaqkrglplpeYelvkeeGpdHap................
                      p   L+ la+krg  +  Y+ ++ +  ++ + + + ++  +++ + +
     fj01677    75    PTVELNGLAMKRGE-PAIYRPLDPKPFPNYRanynfrgmynqryhcp 120  

                   ...rFtvtvkvggkitgeGeGsSKKeAkqaAAeaALrkLk<-*
                    ++ F v+++vg+  ++ GeG++++ A+++AA++AL++L+   
     fj01677   121 vpkIFYVQLTVGN-NEFFGEGKTRQAARHNAAMKALQALQ    159  

SM00358: domain 2 of 3, from 187 to 252: score 76.6, E = 3.1e-18
                   *->pkslLqElaqkrglplpeYelvkeeGpdHaprFtvtvkvggkitgeG
                       +sl+ E+a kr++ ++++e++ke+Gp+H+++F+ +v vg+ + +eG
     fj01677   187    EISLVFEIALKRNM-PVSFEVIKESGPPHMKSFVTRVSVGE-FSAEG 231  

                   eGsSKKeAkqaAAeaALrkLk<-*
                   eG SKK+ k++AA   L++Lk   
     fj01677   232 EGNSKKLSKKRAATTVLQELK    252  

SM00358: domain 3 of 3, from 287 to 353: score 88.8, E = 6.5e-22
                   *->pkslLqElaqkrglplpeYelvkeeGpdHaprFtvtvkvggkitgeG
                      p+s+L ++ q+++ ++p Y l++e G + +++F+++vkvg+ ++++G
     fj01677   287    PISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGN-EVATG 332  

                   eGsSKKeAkqaAAeaALrkLk<-*
                   +G++KK+Ak++AAea+L +L+   
     fj01677   333 TGPNKKIAKKNAAEAMLLQLG    353  

//