hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-05452189/chunk_1/iprscan-20080810-05452189.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj01753 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00431.11.fs CUB domain 172.3 6e-52 2 PF00057.9.fs Low-density lipoprotein receptor domain 156.0 8.9e-50 5 PF00057.9.ls Low-density lipoprotein receptor domain 164.1 3.4e-46 5 PF00431.11.ls CUB domain 152.7 8.9e-43 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00431.11.ls 1/2 2 90 .. 1 116 [] 63.8 5.2e-16 PF00431.11.fs 1/2 3 90 .. 23 116 .] 85.3 1.5e-25 PF00057.9.ls 1/5 98 134 .. 1 40 [] 46.5 8.3e-11 PF00057.9.fs 1/5 98 134 .. 1 40 [] 44.6 9.6e-14 PF00057.9.fs 2/5 147 188 .. 1 40 [] 30.0 5e-09 PF00057.9.ls 2/5 147 188 .. 1 40 [] 31.9 2e-06 PF00431.11.fs 2/2 193 303 .. 1 116 [] 87.0 4.7e-26 PF00431.11.ls 2/2 193 303 .. 1 116 [] 88.9 1.4e-23 PF00057.9.fs 5/5 385 419 .. 3 40 .] 48.8 4.2e-15 PF00057.9.ls 5/5 385 419 .. 1 40 [] 49.1 1.3e-11 Alignments of top-scoring domains: PF00431.11.ls: domain 1 of 2, from 2 to 90: score 63.8, E = 5.2e-16 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF C+++ + +C W Ira+pg+ i+++F fj01753 2 CDYP----------------A-----KINCSWFIRANPGEI-ITISF 26 qdFdlEdhdgaCgYDyVEi..rDGlpssspllGrfCGgsgiPedirStsn qdFd++++++ C+ D++ i++++ +s+ r CG s iP++++S+++ fj01753 27 QDFDIQGSRR-CNLDWLTIetYKNIESY-----RACG-STIPPPYISSQD 69 qmtikFvsDssiqkrGFkaty<-* +i+F+sD++i+++GF++ y fj01753 70 HIWIRFHSDDNISRKGFRLAY 90 PF00431.11.fs: domain 1 of 2, from 3 to 90: score 85.3, E = 1.5e-25 *->pYppnkeCvWtIrappgyrvisLtFqdFdlEdhdgaCgYDyVEi..r +Yp + +C W Ira+pg+ i+++FqdFd++++++ C+ D++ i+++ fj01753 3 DYPAKINCSWFIRANPGEI-ITISFQDFDIQGSRR-CNLDWLTIetY 47 DGlpssspllGrfCGgsgiPedirStsnqmtikFvsDssiqkrGFkaty< + +s+ r CG s iP++++S+++ +i+F+sD++i+++GF++ y fj01753 48 KNIESY-----RACG-STIPPPYISSQDHIWIRFHSDDNISRKGFRLAY 90 -* fj01753 - - PF00057.9.ls: domain 1 of 5, from 98 to 134: score 46.5, E = 8.3e-11 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* ++C+ d+F+Cg+g+ CIp w+C+ + C+D SDE e C fj01753 98 PNCACDQFRCGNGK-CIPEAWKCNNMDECGDSSDE--EIC 134 PF00057.9.fs: domain 1 of 5, from 98 to 134: score 44.6, E = 9.6e-14 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* ++C+ d+F+Cg+g+ CIp w+C+ + C+D SDE e C fj01753 98 PNCACDQFRCGNGK-CIPEAWKCNNMDECGDSSDE--EIC 134 PF00057.9.fs: domain 2 of 5, from 147 to 188: score 30.0, E = 5e-09 *->stCgpdeFqCgsgr....rCIprswvCDGdpDCeDgSDEslenC<-* +C+ ++FqC s+ ++ C p s++CDG DC D DE +C fj01753 147 QPCAYNQFQCLSRFtkvyTCLPESLKCDGNIDCLDLGDE--IDC 188 PF00057.9.ls: domain 2 of 5, from 147 to 188: score 31.9, E = 2e-06 *->stCgpdeFqCgsgr....rCIprswvCDGdpDCeDgSDEslenC<-* +C+ ++FqC s+ ++ C p s++CDG DC D DE +C fj01753 147 QPCAYNQFQCLSRFtkvyTCLPESLKCDGNIDCLDLGDE--IDC 188 PF00431.11.fs: domain 2 of 2, from 193 to 303: score 87.0, E = 4.7e-26 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CG l+ +G++ SPnYP+ Ypp ++C+W+I + + + + L+F fj01753 193 CGQW--LKYFYGTFNSPNYPD-FYPPGSNCTWLIDTGDHRK-VILRF 235 qdFdlEdhdgaCgYDyVEirDGlpss.spllGrfCG.gsgiPedirStsn +dF l ++ + DyV+i+DGl++++++ll + +s++P +++S+s fj01753 236 TDFKLDGTG---YGDYVKIYDGLEENpHKLLRVLTAfDSHAPLTVVSSSG 282 qmtikFvsDssiqkrGFkaty<-* q ++ F D +++rGF+aty fj01753 283 QIRVHFCADKVNAARGFNATY 303 PF00431.11.ls: domain 2 of 2, from 193 to 303: score 88.9, E = 1.4e-23 *->CGgvldltessGsItSPnYPnrpYppnkeCvWtIrappgyrvisLtF CG l+ +G++ SPnYP+ Ypp ++C+W+I + + + + L+F fj01753 193 CGQW--LKYFYGTFNSPNYPD-FYPPGSNCTWLIDTGDHRK-VILRF 235 qdFdlEdhdgaCgYDyVEirDGlpss.spllGrfCG.gsgiPedirStsn +dF l ++ + DyV+i+DGl++++++ll + +s++P +++S+s fj01753 236 TDFKLDGTG---YGDYVKIYDGLEENpHKLLRVLTAfDSHAPLTVVSSSG 282 qmtikFvsDssiqkrGFkaty<-* q ++ F D +++rGF+aty fj01753 283 QIRVHFCADKVNAARGFNATY 303 PF00057.9.fs: domain 5 of 5, from 385 to 419: score 48.8, E = 4.2e-15 *->CgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* C+p+ F+C+++r C+ swvCD ++DC+DgSDE enC fj01753 385 CQPGNFHCKNNR-CVFESWVCDSQDDCGDGSDE--ENC 419 PF00057.9.ls: domain 5 of 5, from 385 to 419: score 49.1, E = 1.3e-11 *->stCgpdeFqCgsgrrCIprswvCDGdpDCeDgSDEslenC<-* C+p+ F+C+++r C+ swvCD ++DC+DgSDE enC fj01753 385 --CQPGNFHCKNNR-CVFESWVCDSQDDCGDGSDE--ENC 419 //