hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-05452189/chunk_1/iprscan-20080810-05452189.nocrc
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Query sequence: fj01753
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00192                                                 212.0    5.2e-59   5
SM00042                                                 141.7    7.6e-38   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00042    1/2       2    93 ..     1   144 []    45.8  5.8e-09
SM00192    1/5     101   136 ..     1    47 []    56.3    4e-12
SM00192    2/5     148   190 ..     1    47 []    40.4  2.4e-07
SM00042    2/2     193   306 ..     1   144 []    95.9  4.6e-24
SM00192    3/5     308   346 ..     1    47 []    26.4   0.0033
SM00192    4/5     347   384 ..     1    47 []    36.7  3.1e-06
SM00192    5/5     385   421 ..     1    47 []    52.2  6.7e-11

Alignments of top-scoring domains:
SM00042: domain 1 of 2, from 2 to 93: score 45.8, E = 5.8e-09
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      C                     YP +          +C+W I+a pG
     fj01753     2    CD--------------------YPAK---------INCSWFIRANPG 19   

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiy.....DGpskts
                     i+++F+d   Fd+ +s+          C  D+++i + ++ +++    
     fj01753    20 EIITISFQD---FDIQGSRR---------CNLDWLTIEtykniESY---- 53   

                   spllGntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsa
                            r CGs+ +p++isS  ++++++F+sD +++     ++GF++
     fj01753    54 ---------RACGSTipPpYISS-QDHIWIRFHSDDNIS-----RKGFRL 88   

                   rYsav<-*
                    Y++    
     fj01753    89 AYFSG    93   

SM00192: domain 1 of 5, from 101 to 136: score 56.3, E = 4e-12
                   *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps
                       C+     +F+Cgng+CIp++w+C++ d CgD SDE      e C++
     fj01753   101    ACD-----QFRCGNGKCIPEAWKCNNMDECGDSSDE------EICAK 136  

                   <-*
                      
     fj01753     -     -    

SM00192: domain 2 of 5, from 148 to 190: score 40.4, E = 2.4e-07
                   *->tCspgepneFqCg.....ngrCIplswvCDGddDCgDGSDEdpaidp
                      +C+ +   +FqC ++ ++  +C+p+s++CDG  DC D  DE      
     fj01753   148    PCAYN---QFQCLsrftkVYTCLPESLKCDGNIDCLDLGDE------ 185  

                   enCps<-*
                    +C     
     fj01753   186 IDCDV    190  

SM00042: domain 2 of 2, from 193 to 306: score 95.9, E = 4.6e-24
                   *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG
                      CG  l++        Gt+ SPnYP+      Yp++++C+W+I + + 
     fj01753   193    CGQWLKYFY------GTFNSPNYPDF-----YPPGSNCTWLIDTGDH 228  

                   yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG
                    +++L+Ftd   F l ++              Dyv+iyDG +++ ++ll 
     fj01753   229 RKVILRFTD---FKLDGTGY-----------GDYVKIYDGLEENPHKLLR 264  

                   ntearfCGse...p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsa
                        +    ++ p ++ Sss +++v+F  D  +      +rGF+a+Y+ 
     fj01753   265 ----VLTAFDshaPlTVVSSSGQIRVHFCADKVNA-----ARGFNATYQV 305  

                   v<-*
                   +   
     fj01753   306 D    306  

SM00192: domain 3 of 5, from 308 to 346: score 26.4, E = 0.0033
                   *->tCspgepneFqCg.ngrCIplswvCDGddDCgDGSDEdpaidpenCp
                       C p    e  Cg+n  C  + ++CDG+  C++G DE       nC+
     fj01753   308    FCLPW---EIPCGgNWGCYTEQQRCDGYWHCPNGRDE------TNCT 345  

                   s<-*
                       
     fj01753   346 M    346  

SM00192: domain 4 of 5, from 347 to 384: score 36.7, E = 3.1e-06
                   *->tCspgepneFqCg.ngrCIplswvCDGddDCgDGSDEdpaidpenCp
                       C+     eF C++ng C p+s +C+ ++ C++GSDE      +nC 
     fj01753   347    -CQKE---EFPCSrNGVCYPRSDRCNYQNHCPNGSDE------KNCF 383  

                   s<-*
                       
     fj01753   384 F    384  

SM00192: domain 5 of 5, from 385 to 421: score 52.2, E = 6.7e-11
                   *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps
                       C+pg    F+C+n+rC+ +swvCD +dDCgDGSDE      enCp 
     fj01753   385    -CQPG---NFHCKNNRCVFESWVCDSQDDCGDGSDE------ENCPV 421  

                   <-*
                      
     fj01753     -     -    

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