hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-05582616/chunk_1/iprscan-20080810-05582616.nocrc
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Query sequence: fj01782
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00078                                                  99.3    4.4e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00078    1/1      82   140 ..     1    71 []    99.3  4.4e-25

Alignments of top-scoring domains:
SM00078: domain 1 of 1, from 82 to 140: score 99.3, E = 4.4e-25
                   *->qhLCGrhLVralylvCgergffyspkraqyaeygqvaglqlgsleer
                      ++LCG +LV+al++vCg+rgf++++++++            gs+++r
     fj01782    82    ETLCGAELVDALQFVCGDRGFYFNKPTGY------------GSSSRR 116  

                   rgkrGIVeqCChrgCtldqLesYC<-*
                    +++GIV++CC+r+C+l+ Le+YC   
     fj01782   117 APQTGIVDECCFRSCDLRRLEMYC    140  

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