# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj01961.fasta.nr -Q fj01961.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj01961, 527 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6820155 sequences Expectation_n fit: rho(ln(x))= 5.5306+/-0.000193; mu= 10.4448+/- 0.011 mean_var=97.5400+/-18.634, 0's: 37 Z-trim: 48 B-trim: 0 in 0/67 Lambda= 0.129862 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62087956|dbj|BAD92425.1| fragile X mental retar ( 527) 3487 663.8 2.9e-188 gi|119581704|gb|EAW61300.1| fragile X mental retar ( 594) 3101 591.5 1.9e-166 gi|75054952|sp|Q5R9B4.1|FMR1_PONAB Fragile X menta ( 594) 3086 588.7 1.3e-165 gi|119581701|gb|EAW61297.1| fragile X mental retar ( 592) 3073 586.2 7.1e-165 gi|182673|gb|AAA52458.1| FMR1 ( 657) 3073 586.3 7.7e-165 gi|193806167|sp|Q80WE1.2|FMR1_RAT Fragile X mental ( 593) 3004 573.3 5.5e-161 gi|1518669|gb|AAB07073.1| RNA binding protein ( 550) 2987 570.1 4.8e-160 gi|457239|gb|AAB18830.1| fragile X mental retardat ( 607) 2638 504.8 2.5e-140 gi|74008629|ref|XP_866715.1| PREDICTED: similar to ( 607) 2581 494.1 4e-137 gi|74008625|ref|XP_866690.1| PREDICTED: similar to ( 582) 2499 478.7 1.7e-132 gi|56270285|gb|AAH86957.1| FMR1 protein [Homo sapi ( 586) 2494 477.8 3.2e-132 gi|30143329|gb|AAP15341.1| FMRP isoform 18 [Rattus ( 581) 2457 470.8 3.9e-130 gi|109132537|ref|XP_001087382.1| PREDICTED: simila ( 586) 2448 469.1 1.3e-129 gi|149755309|ref|XP_001489735.1| PREDICTED: simila ( 586) 2440 467.6 3.5e-129 gi|74008641|ref|XP_866799.1| PREDICTED: similar to ( 586) 2440 467.6 3.5e-129 gi|194044850|ref|XP_001925802.1| PREDICTED: fragil ( 586) 2439 467.5 4e-129 gi|457240|gb|AAB18829.1| fragile X mental retardat ( 590) 2285 438.6 2e-120 gi|74008627|ref|XP_538191.2| PREDICTED: similar to ( 590) 2236 429.4 1.1e-117 gi|148669267|gb|EDL01214.1| fragile X mental retar ( 536) 2222 426.8 6.5e-117 gi|18252630|gb|AAL66364.1|AF461114_1 fragile X men ( 589) 2211 424.7 2.9e-116 gi|457238|gb|AAB18831.1| fragile X mental retardat ( 603) 2115 406.8 7.7e-111 gi|74008631|ref|XP_866730.1| PREDICTED: similar to ( 603) 2061 396.7 8.6e-108 gi|457236|gb|AAB18832.1| fragile X mental retardat ( 615) 2058 396.1 1.3e-107 gi|74008633|ref|XP_866744.1| PREDICTED: similar to ( 615) 2010 387.1 6.5e-105 gi|50927504|gb|AAH79671.1| Fragile X mental retard ( 614) 2001 385.4 2.1e-104 gi|544329|sp|P35922|FMR1_MOUSE Fragile X mental re ( 614) 1990 383.4 8.8e-104 gi|457237|gb|AAB18828.1| fragile X mental retardat ( 620) 1899 366.3 1.2e-98 gi|74008611|ref|XP_852954.1| PREDICTED: similar to ( 620) 1853 357.7 4.7e-96 gi|544328|sp|Q06787|FMR1_HUMAN Fragile X mental re ( 632) 1852 357.5 5.4e-96 gi|114690436|ref|XP_521294.2| PREDICTED: hypotheti ( 920) 1848 356.9 1.2e-95 gi|149755307|ref|XP_001489708.1| PREDICTED: simila ( 632) 1814 350.4 7.5e-94 gi|74008615|ref|XP_866629.1| PREDICTED: similar to ( 493) 1808 349.2 1.4e-93 gi|74008613|ref|XP_866618.1| PREDICTED: similar to ( 632) 1808 349.3 1.6e-93 gi|109132535|ref|XP_001087617.1| PREDICTED: simila ( 632) 1808 349.3 1.6e-93 gi|194044848|ref|XP_001925767.1| PREDICTED: fragil ( 632) 1807 349.1 1.9e-93 gi|148669266|gb|EDL01213.1| fragile X mental retar ( 561) 1798 347.3 5.5e-93 gi|119919788|ref|XP_584093.3| PREDICTED: hypotheti ( 820) 1787 345.4 3e-92 gi|74008621|ref|XP_866662.1| PREDICTED: similar to ( 527) 1726 333.8 6.1e-89 gi|149410945|ref|XP_001512307.1| PREDICTED: simila ( 600) 1708 330.5 6.9e-88 gi|126342432|ref|XP_001375981.1| PREDICTED: hypoth (1158) 1710 331.2 8.5e-88 gi|74008623|ref|XP_866674.1| PREDICTED: similar to ( 582) 1700 329.0 1.9e-87 gi|26343777|dbj|BAC35545.1| unnamed protein produc ( 357) 1691 327.1 4.3e-87 gi|47214115|emb|CAG00680.1| unnamed protein produc ( 524) 1666 322.6 1.5e-85 gi|74008639|ref|XP_866784.1| PREDICTED: similar to ( 566) 1587 307.8 4.4e-81 gi|74008635|ref|XP_866759.1| PREDICTED: similar to ( 492) 1549 300.6 5.6e-79 gi|74008619|ref|XP_866651.1| PREDICTED: similar to ( 517) 1540 299.0 1.9e-78 gi|74008637|ref|XP_866771.1| PREDICTED: similar to ( 549) 1540 299.0 1.9e-78 gi|50746068|ref|XP_420363.1| PREDICTED: similar to ( 565) 1490 289.6 1.3e-75 gi|1587276|prf||2206375A fragile X mental retardat ( 565) 1490 289.6 1.3e-75 gi|82236383|sp|Q6GLC9.1|FMR1_XENTR Fragile X menta ( 590) 1452 282.5 1.9e-73 >>gi|62087956|dbj|BAD92425.1| fragile X mental retardati (527 aa) initn: 3487 init1: 3487 opt: 3487 Z-score: 3535.0 bits: 663.8 E(): 2.9e-188 Smith-Waterman score: 3487; 100.000% identity (100.000% similar) in 527 aa overlap (1-527:1-527) 10 20 30 40 50 60 fj0196 LLFISQFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPEDLRQMCAKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LLFISQFYVIEYAACDATYNEIVTIERLRSVNPNKPATKDTFHKIKLDVPEDLRQMCAKE 10 20 30 40 50 60 70 80 90 100 110 120 fj0196 AAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLIMRNEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 AAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSKRAHMLIDMHFRSLRTKLSLIMRNEE 70 80 90 100 110 120 130 140 150 160 170 180 fj0196 ASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDEDTCTFHI 130 140 150 160 170 180 190 200 210 220 230 240 fj0196 YGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 YGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEK 190 200 210 220 230 240 250 260 270 280 290 300 fj0196 NVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIKENSTHFSQPNSTKVQRGMVPFVFVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 NVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIKENSTHFSQPNSTKVQRGMVPFVFVG 250 260 270 280 290 300 310 320 330 340 350 360 fj0196 TKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQLRQIGASSRPPPNRTDKEKSYVTDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQLRQIGASSRPPPNRTDKEKSYVTDD 310 320 330 340 350 360 370 380 390 400 410 420 fj0196 GQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEERESF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEERESF 370 380 390 400 410 420 430 440 450 460 470 480 fj0196 LRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTDNRPRNPREAKGRTTDGSLQIRVDCN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTDNRPRNPREAKGRTTDGSLQIRVDCN 430 440 450 460 470 480 490 500 510 520 fj0196 NERSVHTKTLQNTSSEGSRLRTGKDRNQKKEKPDSVDGQQPLVNGVP ::::::::::::::::::::::::::::::::::::::::::::::: gi|620 NERSVHTKTLQNTSSEGSRLRTGKDRNQKKEKPDSVDGQQPLVNGVP 490 500 510 520 >>gi|119581704|gb|EAW61300.1| fragile X mental retardati (594 aa) initn: 3101 init1: 3101 opt: 3101 Z-score: 3143.5 bits: 591.5 E(): 1.9e-166 Smith-Waterman score: 3297; 96.552% identity (96.743% similar) in 522 aa overlap (6-527:90-594) 10 20 30 fj0196 LLFISQFYVIEYAACDATYNEIVTIERLRSVNPNK .::::::::::::::::::::::::::::: gi|119 NESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNK 60 70 80 90 100 110 40 50 60 70 80 90 fj0196 PATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK 120 130 140 150 160 170 100 110 120 130 140 150 fj0196 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA 180 190 200 210 220 230 160 170 180 190 200 210 fj0196 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK 240 250 260 270 280 290 220 230 240 250 260 270 fj0196 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIK 300 310 320 330 340 350 280 290 300 310 320 330 fj0196 ENSTHFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ENSTHFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ 360 370 380 390 400 410 340 350 360 370 380 390 fj0196 LRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNAS 420 430 440 450 460 470 400 410 420 430 440 450 fj0196 ETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTD 480 490 500 510 520 530 460 470 480 490 500 510 fj0196 NRPRNPREAKGRTTDGSLQIRVDCNNERSVHTKTLQNTSSEGSRLRTGKDRNQKKEKPDS ::::::::::::::::::: :::::::::::::::::::::::: gi|119 NRPRNPREAKGRTTDGSLQ-----------------NTSSEGSRLRTGKDRNQKKEKPDS 540 550 560 570 580 520 fj0196 VDGQQPLVNGVP :::::::::::: gi|119 VDGQQPLVNGVP 590 >>gi|75054952|sp|Q5R9B4.1|FMR1_PONAB Fragile X mental re (594 aa) initn: 3086 init1: 3086 opt: 3086 Z-score: 3128.3 bits: 588.7 E(): 1.3e-165 Smith-Waterman score: 3272; 95.594% identity (96.743% similar) in 522 aa overlap (6-527:90-594) 10 20 30 fj0196 LLFISQFYVIEYAACDATYNEIVTIERLRSVNPNK .::::::::::::::::::::::::::::: gi|750 NESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNK 60 70 80 90 100 110 40 50 60 70 80 90 fj0196 PATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|750 PATKDTFHKIKLDVPEDLRQMCAKESAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK 120 130 140 150 160 170 100 110 120 130 140 150 fj0196 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA 180 190 200 210 220 230 160 170 180 190 200 210 fj0196 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK 240 250 260 270 280 290 220 230 240 250 260 270 fj0196 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|750 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLEIK 300 310 320 330 340 350 280 290 300 310 320 330 fj0196 ENSTHFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 ENSTHFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ 360 370 380 390 400 410 340 350 360 370 380 390 fj0196 LRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 LRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNAS 420 430 440 450 460 470 400 410 420 430 440 450 fj0196 ETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTD ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|750 ETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFEGNDDHSRTD 480 490 500 510 520 530 460 470 480 490 500 510 fj0196 NRPRNPREAKGRTTDGSLQIRVDCNNERSVHTKTLQNTSSEGSRLRTGKDRNQKKEKPDS ::::::::::::::::::: ::::::.:::::::::.::::::: gi|750 NRPRNPREAKGRTTDGSLQ-----------------NTSSEGNRLRTGKDRNRKKEKPDS 540 550 560 570 580 520 fj0196 VDGQQPLVNGVP :::::::::::: gi|750 VDGQQPLVNGVP 590 >>gi|119581701|gb|EAW61297.1| fragile X mental retardati (592 aa) initn: 3073 init1: 1773 opt: 3073 Z-score: 3115.2 bits: 586.2 E(): 7.1e-165 Smith-Waterman score: 3269; 96.169% identity (96.360% similar) in 522 aa overlap (6-527:90-592) 10 20 30 fj0196 LLFISQFYVIEYAACDATYNEIVTIERLRSVNPNK .::::::::::::::::::::::::::::: gi|119 NESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNK 60 70 80 90 100 110 40 50 60 70 80 90 fj0196 PATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK 120 130 140 150 160 170 100 110 120 130 140 150 fj0196 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA 180 190 200 210 220 230 160 170 180 190 200 210 fj0196 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|119 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLV--VIGK 240 250 260 270 280 290 220 230 240 250 260 270 fj0196 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIK 300 310 320 330 340 350 280 290 300 310 320 330 fj0196 ENSTHFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ENSTHFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ 360 370 380 390 400 410 340 350 360 370 380 390 fj0196 LRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNAS 420 430 440 450 460 470 400 410 420 430 440 450 fj0196 ETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTD 480 490 500 510 520 530 460 470 480 490 500 510 fj0196 NRPRNPREAKGRTTDGSLQIRVDCNNERSVHTKTLQNTSSEGSRLRTGKDRNQKKEKPDS ::::::::::::::::::: :::::::::::::::::::::::: gi|119 NRPRNPREAKGRTTDGSLQ-----------------NTSSEGSRLRTGKDRNQKKEKPDS 540 550 560 570 580 520 fj0196 VDGQQPLVNGVP :::::::::::: gi|119 VDGQQPLVNGVP 590 >>gi|182673|gb|AAA52458.1| FMR1 (657 aa) initn: 3073 init1: 1773 opt: 3073 Z-score: 3114.6 bits: 586.3 E(): 7.7e-165 Smith-Waterman score: 3269; 96.169% identity (96.360% similar) in 522 aa overlap (6-527:155-657) 10 20 30 fj0196 LLFISQFYVIEYAACDATYNEIVTIERLRSVNPNK .::::::::::::::::::::::::::::: gi|182 NESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNK 130 140 150 160 170 180 40 50 60 70 80 90 fj0196 PATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 PATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK 190 200 210 220 230 240 100 110 120 130 140 150 fj0196 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA 250 260 270 280 290 300 160 170 180 190 200 210 fj0196 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|182 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLV--VIGK 310 320 330 340 350 360 220 230 240 250 260 270 fj0196 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIK 370 380 390 400 410 420 280 290 300 310 320 330 fj0196 ENSTHFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 ENSTHFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ 430 440 450 460 470 480 340 350 360 370 380 390 fj0196 LRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 LRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNAS 490 500 510 520 530 540 400 410 420 430 440 450 fj0196 ETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 ETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTD 550 560 570 580 590 600 460 470 480 490 500 510 fj0196 NRPRNPREAKGRTTDGSLQIRVDCNNERSVHTKTLQNTSSEGSRLRTGKDRNQKKEKPDS ::::::::::::::::::: :::::::::::::::::::::::: gi|182 NRPRNPREAKGRTTDGSLQ-----------------NTSSEGSRLRTGKDRNQKKEKPDS 610 620 630 640 520 fj0196 VDGQQPLVNGVP :::::::::::: gi|182 VDGQQPLVNGVP 650 >>gi|193806167|sp|Q80WE1.2|FMR1_RAT Fragile X mental ret (593 aa) initn: 2031 init1: 1688 opt: 3004 Z-score: 3045.3 bits: 573.3 E(): 5.5e-161 Smith-Waterman score: 3185; 93.487% identity (95.594% similar) in 522 aa overlap (6-527:90-593) 10 20 30 fj0196 LLFISQFYVIEYAACDATYNEIVTIERLRSVNPNK .::::::::::::::::::::::::::::: gi|193 NESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNK 60 70 80 90 100 110 40 50 60 70 80 90 fj0196 PATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK ::::::::::::.::::::::::::.:::::::::::::::::::::::::::::::::: gi|193 PATKDTFHKIKLEVPEDLRQMCAKESAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK 120 130 140 150 160 170 100 110 120 130 140 150 fj0196 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|193 RAHMLIDMHFRSLRTKLSLILRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA 180 190 200 210 220 230 160 170 180 190 200 210 fj0196 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK 240 250 260 270 280 290 220 230 240 250 260 270 fj0196 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIK :::::::::::::::::::::::::.:::::: .::.:::::::::: :. ::::::: : gi|193 NGKLIQEIVDKSGVVRVRIEAENEKSVPQEEENLPPSSLPSNNSRVGSNSSEEKKHLDTK 300 310 320 330 340 350 280 290 300 310 320 330 fj0196 ENSTHFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 EN-THFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ 360 370 380 390 400 410 340 350 360 370 380 390 fj0196 LRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNAS :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|193 LRQIGASSRPPPNRTDKEKGYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNAS 420 430 440 450 460 470 400 410 420 430 440 450 fj0196 ETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 ETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTD 480 490 500 510 520 530 460 470 480 490 500 510 fj0196 NRPRNPREAKGRTTDGSLQIRVDCNNERSVHTKTLQNTSSEGSRLRTGKDRNQKKEKPDS ::::::::.:::::::::: .::::::::::::::::::::::: gi|193 NRPRNPRETKGRTTDGSLQ-----------------STSSEGSRLRTGKDRNQKKEKPDS 540 550 560 570 580 520 fj0196 VDGQQPLVNGVP ::: :::::::: gi|193 VDGLQPLVNGVP 590 >>gi|1518669|gb|AAB07073.1| RNA binding protein (550 aa) initn: 1979 init1: 1676 opt: 2987 Z-score: 3028.5 bits: 570.1 E(): 4.8e-160 Smith-Waterman score: 3128; 92.829% identity (95.349% similar) in 516 aa overlap (6-521:53-550) 10 20 30 fj0196 LLFISQFYVIEYAACDATYNEIVTIERLRSVNPNK .:::::::::::::::::::.::::::::: gi|151 NESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIDRLRSVNPNK 30 40 50 60 70 80 40 50 60 70 80 90 fj0196 PATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK ::::::::::::.::::::::::::.:::::::::::::::::::::::::::::::::: gi|151 PATKDTFHKIKLEVPEDLRQMCAKESAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK 90 100 110 120 130 140 100 110 120 130 140 150 fj0196 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA :::: :::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|151 RAHMSIDMHFRSLRTKLSLILRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA 150 160 170 180 190 200 160 170 180 190 200 210 fj0196 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK 210 220 230 240 250 260 220 230 240 250 260 270 fj0196 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIK :::::::::::::::::::::::::.:::::: .::.:::::::::: :. ::::::: : gi|151 NGKLIQEIVDKSGVVRVRIEAENEKSVPQEEENLPPSSLPSNNSRVGSNSSEEKKHLDTK 270 280 290 300 310 320 280 290 300 310 320 330 fj0196 ENSTHFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ :: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 EN-THFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ 330 340 350 360 370 380 340 350 360 370 380 390 fj0196 LRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNAS :::::.:::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|151 LRQIGVSSRPPPNRTDKEKGYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNAS 390 400 410 420 430 440 400 410 420 430 440 450 fj0196 ETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|151 ETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTD 450 460 470 480 490 500 460 470 480 490 500 510 fj0196 NRPRNPREAKGRTTDGSLQIRVDCNNERSVHTKTLQNTSSEGSRLRTGKDRNQKKEKPDS ::::::::.:::::::::: .::::::::::::::::::::::: gi|151 NRPRNPRETKGRTTDGSLQ-----------------STSSEGSRLRTGKDRNQKKEKPDS 510 520 530 540 520 fj0196 VDGQQPLVNGVP ::: :: gi|151 VDGLQP 550 >>gi|457239|gb|AAB18830.1| fragile X mental retardation (607 aa) initn: 2662 init1: 1850 opt: 2638 Z-score: 2674.6 bits: 504.8 E(): 2.5e-140 Smith-Waterman score: 3180; 91.344% identity (91.529% similar) in 543 aa overlap (6-527:90-607) 10 20 30 fj0196 LLFISQFYVIEYAACDATYNEIVTIERLRSVNPNK .::::::::::::::::::::::::::::: gi|457 NESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNK 60 70 80 90 100 110 40 50 60 70 80 90 fj0196 PATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 PATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK 120 130 140 150 160 170 100 110 120 130 140 150 fj0196 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA 180 190 200 210 220 230 160 170 180 190 200 210 fj0196 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK 240 250 260 270 280 290 220 230 240 250 260 270 fj0196 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIK 300 310 320 330 340 350 280 290 300 310 fj0196 ENSTHFSQPNSTKVQR---------------------GMVPFVFVGTKDSIANATVLLDY :::::::::::::::: ::::::::::::::::::::::: gi|457 ENSTHFSQPNSTKVQRVLVASSVVAGESQKPELKAWQGMVPFVFVGTKDSIANATVLLDY 360 370 380 390 400 410 320 330 340 350 360 370 fj0196 HLNYLKEVDQLRLERLQIDEQLRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 HLNYLKEVDQLRLERLQIDEQLRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNR 420 430 440 450 460 470 380 390 400 410 420 430 fj0196 GHGRRGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGR ::::::::::: :::::::::::::::::::::::: gi|457 GHGRRGPGYTS-------------------------APTEEERESFLRRGDGRRRGGGGR 480 490 500 510 440 450 460 470 480 490 fj0196 GQGGRGRGGGFKGNDDHSRTDNRPRNPREAKGRTTDGSLQIRVDCNNERSVHTKTLQNTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|457 GQGGRGRGGGFKGNDDHSRTDNRPRNPREAKGRTTDGSLQIRVDCNNERSVHTKTLQNTS 520 530 540 550 560 570 500 510 520 fj0196 SEGSRLRTGKDRNQKKEKPDSVDGQQPLVNGVP ::::::::::::::::::::::::::::::::: gi|457 SEGSRLRTGKDRNQKKEKPDSVDGQQPLVNGVP 580 590 600 >>gi|74008629|ref|XP_866715.1| PREDICTED: similar to fra (607 aa) initn: 2606 init1: 1803 opt: 2581 Z-score: 2616.9 bits: 494.1 E(): 4e-137 Smith-Waterman score: 3111; 88.950% identity (91.160% similar) in 543 aa overlap (6-527:90-607) 10 20 30 fj0196 LLFISQFYVIEYAACDATYNEIVTIERLRSVNPNK .::::::::::::::::::::::::::::: gi|740 NESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNK 60 70 80 90 100 110 40 50 60 70 80 90 fj0196 PATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|740 PATKDTFHKIKLDVPEDLRQMCAKESAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK 120 130 140 150 160 170 100 110 120 130 140 150 fj0196 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|740 RAHMLIDMHFRSLRTKLSLILRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA 180 190 200 210 220 230 160 170 180 190 200 210 fj0196 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK 240 250 260 270 280 290 220 230 240 250 260 270 fj0196 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIK :::::::::::::::::::::::::.:::::::::::::::.::::::. :::::.::: gi|740 NGKLIQEIVDKSGVVRVRIEAENEKSVPQEEEIMPPNSLPSSNSRVGPTPSEEKKHIDIK 300 310 320 330 340 350 280 290 300 310 fj0196 ENSTHFSQPNSTKVQR---------------------GMVPFVFVGTKDSIANATVLLDY :::::::::::::::: ::::::::::::::::::::::: gi|740 ENSTHFSQPNSTKVQRVLVVSSIVAGESQKPELKAWQGMVPFVFVGTKDSIANATVLLDY 360 370 380 390 400 410 320 330 340 350 360 370 fj0196 HLNYLKEVDQLRLERLQIDEQLRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNR ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|740 HLNYLKEVDQLRLERLQIDEQLRQIGASSRPPPNRTDKEKGYVTDDGQGMGRGSRPYRNR 420 430 440 450 460 470 380 390 400 410 420 430 fj0196 GHGRRGPGYTSGTNSEASNASETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGR ::::::::::: ::::::::.::::::::::::::: gi|740 GHGRRGPGYTS-------------------------APTEEERENFLRRGDGRRRGGGGR 480 490 500 510 440 450 460 470 480 490 fj0196 GQGGRGRGGGFKGNDDHSRTDNRPRNPREAKGRTTDGSLQIRVDCNNERSVHTKTLQNTS ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|740 GQGGRGRGGGFKGNDDHSRTDNRPRNPREAKGRTADGSLQIRVDCNNERSVHTKTLQNTS 520 530 540 550 560 570 500 510 520 fj0196 SEGSRLRTGKDRNQKKEKPDSVDGQQPLVNGVP :::.::::::::::::::::.:::::::::::: gi|740 SEGNRLRTGKDRNQKKEKPDNVDGQQPLVNGVP 580 590 600 >>gi|74008625|ref|XP_866690.1| PREDICTED: similar to fra (582 aa) initn: 2696 init1: 2464 opt: 2499 Z-score: 2534.1 bits: 478.7 E(): 1.7e-132 Smith-Waterman score: 3125; 91.762% identity (94.061% similar) in 522 aa overlap (6-527:90-582) 10 20 30 fj0196 LLFISQFYVIEYAACDATYNEIVTIERLRSVNPNK .::::::::::::::::::::::::::::: gi|740 NESDEVEVYSRANEKEPCCWWLAKVRMIKGEFYVIEYAACDATYNEIVTIERLRSVNPNK 60 70 80 90 100 110 40 50 60 70 80 90 fj0196 PATKDTFHKIKLDVPEDLRQMCAKEAAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|740 PATKDTFHKIKLDVPEDLRQMCAKESAHKDFKKAVGAFSVTYDPENYQLVILSINEVTSK 120 130 140 150 160 170 100 110 120 130 140 150 fj0196 RAHMLIDMHFRSLRTKLSLIMRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|740 RAHMLIDMHFRSLRTKLSLILRNEEASKQLESSRQLASRFHEQFIVREDLMGLAIGTHGA 180 190 200 210 220 230 160 170 180 190 200 210 fj0196 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 NIQQARKVPGVTAIDLDEDTCTFHIYGEDQDAVKKARSFLEFAEDVIQVPRNLVGKVIGK 240 250 260 270 280 290 220 230 240 250 260 270 fj0196 NGKLIQEIVDKSGVVRVRIEAENEKNVPQEEEIMPPNSLPSNNSRVGPNAPEEKKHLDIK :::::::::::::::::::::::::.:::::::::::::::.::::::. :::::.::: gi|740 NGKLIQEIVDKSGVVRVRIEAENEKSVPQEEEIMPPNSLPSSNSRVGPTPSEEKKHIDIK 300 310 320 330 340 350 280 290 300 310 320 330 fj0196 ENSTHFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 ENSTHFSQPNSTKVQRGMVPFVFVGTKDSIANATVLLDYHLNYLKEVDQLRLERLQIDEQ 360 370 380 390 400 410 340 350 360 370 380 390 fj0196 LRQIGASSRPPPNRTDKEKSYVTDDGQGMGRGSRPYRNRGHGRRGPGYTSGTNSEASNAS :::::::::::::::::::.:::::::::::::::::::::::::::::: gi|740 LRQIGASSRPPPNRTDKEKGYVTDDGQGMGRGSRPYRNRGHGRRGPGYTS---------- 420 430 440 450 460 400 410 420 430 440 450 fj0196 ETESDHRDELSDWSLAPTEEERESFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTD :::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|740 --ESDHRDELSDWSLAPTEEERENFLRRGDGRRRGGGGRGQGGRGRGGGFKGNDDHSRTD 470 480 490 500 510 520 460 470 480 490 500 510 fj0196 NRPRNPREAKGRTTDGSLQIRVDCNNERSVHTKTLQNTSSEGSRLRTGKDRNQKKEKPDS :::::::::::::.::::: ::::::.::::::::::::::::. gi|740 NRPRNPREAKGRTADGSLQ-----------------NTSSEGNRLRTGKDRNQKKEKPDN 530 540 550 560 570 520 fj0196 VDGQQPLVNGVP :::::::::::: gi|740 VDGQQPLVNGVP 580 527 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 06:08:52 2008 done: Sun Aug 10 06:11:13 2008 Total Scan time: 892.190 Total Display time: 0.180 Function used was FASTA [version 34.26.5 April 26, 2007]