hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-06111428/chunk_1/iprscan-20080810-06111428.nocrc
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Query sequence: fj01961
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00013.19.fs KH domain                                       63.0    4.9e-17   2
PF00013.19.ls KH domain                                       64.9    2.4e-16   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00013.19.fs   1/2     136   195 ..     1    73 []    31.4  3.9e-08
PF00013.19.ls   1/2     136   195 ..     1    73 []    33.2  8.4e-07
PF00013.19.fs   2/2     199   248 ..     1    56 [.    31.6  3.6e-08
PF00013.19.ls   2/2     199   249 ..     1    73 []    31.7  2.4e-06

Alignments of top-scoring domains:
PF00013.19.fs: domain 1 of 2, from 136 to 195: score 31.4, E = 3.9e-08
                   *->tirilipsskvGriIGkgGstIkeIreetGa.kIdipddgesknlpe
                       +++++ ++++G+ IG +G++I++ r+  G++ Id+++d        
     fj01961   136    HEQFIVREDLMGLAIGTHGANIQQARKVPGVtAIDLDEDT------- 175  

                   dplngsgertvtIsGt.peavekAkkli<-*
                            t++I G++++av+kA+  +   
     fj01961   176 --------CTFHIYGEdQDAVKKARSFL    195  

PF00013.19.ls: domain 1 of 2, from 136 to 195: score 33.2, E = 8.4e-07
                   *->tirilipsskvGriIGkgGstIkeIreetGa.kIdipddgesknlpe
                       +++++ ++++G+ IG +G++I++ r+  G++ Id+++d        
     fj01961   136    HEQFIVREDLMGLAIGTHGANIQQARKVPGVtAIDLDEDT------- 175  

                   dplngsgertvtIsGt.peavekAkkli<-*
                            t++I G++++av+kA+  +   
     fj01961   176 --------CTFHIYGEdQDAVKKARSFL    195  

PF00013.19.fs: domain 2 of 2, from 199 to 248: score 31.6, E = 3.6e-08
                   *->tirilipsskvGriIGkgGstIkeIreetGa.kIdipddgesknlpe
                      + +i++p ++vG++IGk+G+ I+eI +++G+ +++i+ ++     ++
     fj01961   199    EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVvRVRIEAEN-----EK 240  

                   dplngsgert<-*
                   +   + +e++   
     fj01961   241 NV--PQEEEI    248  

PF00013.19.ls: domain 2 of 2, from 199 to 249: score 31.7, E = 2.4e-06
                   *->tirilipsskvGriIGkgGstIkeIreetGa.kIdipddgesknlpe
                      + +i++p ++vG++IGk+G+ I+eI +++G+ +++i+ ++       
     fj01961   199    EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVvRVRIEAEN------- 238  

                   dplngsgertvtIsGtpeavekAkkli<-*
                                   +++v + ++ +   
     fj01961   239 ----------------EKNVPQEEEIM    249  

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