hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-06111428/chunk_1/iprscan-20080810-06111428.nocrc
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Query sequence: fj01961
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00322                                                  49.1    5.7e-10   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00322    1/2     133   199 ..     1    63 []    26.6   0.0035
SM00322    2/2     200   317 ..     1    63 []    22.6    0.057

Alignments of top-scoring domains:
SM00322: domain 1 of 2, from 133 to 199: score 26.6, E = 0.0035
                   *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg..ertvt
                       +  +++ + +d++G+ IG  G++I++ ++  gv  +  +++  t++
     fj01961   133    SrFHEQFiVREDLMGLAIGTHGANIQQARKVPGVTAIDLDedTCTFH 179  

                   ItGppenvekAkelileile<-*
                   I+G+++++ k ++  le  e   
     fj01961   180 IYGEDQDAVKKARSFLEFAE    199  

SM00322: domain 2 of 2, from 200 to 317: score 22.6, E = 0.057
                   *->avtiev.ipadkvGriIGkgGstIkkieeet.gvkIdipg.......
                          ++++p ++vG++IGk+G+ I++i ++++ v+++i+ +++++ +
     fj01961   200    ---DVIqVPRNLVGKVIGKNGKLIQEIVDKSgVVRVRIEAeneknvp 243  

                   .................................................e
                    +++  ++++ ++++++ +++ ++++++ + ++++++ + +++++  ++ 
     fj01961   244 qeeeimppnslpsnnsrvgpnapeekkhldikensthfsqpnstkvqrgM 293  

                   rtvtItGppenvekAkelileile<-*
                    +++  G+++ ++ A  l+   l+   
     fj01961   294 VPFVFVGTKDSIANATVLLDYHLN    317  

//