hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-06173731/chunk_1/iprscan-20080810-06173731.nocrc
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Query sequence: fj02009
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 369.0   2.8e-106   1
SM00219                                                  28.8    6.4e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      70   315 ..     1   280 []    28.8  6.4e-13
SM00220    1/1      70   324 ..     1   231 []   369.0 2.8e-106

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 70 to 315: score 28.8, E = 6.4e-13
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda......keeFl
                       + +k+LG G FG+V++ + k +++  A K L + +  + +++e  l
     fj02009    70    FERKKTLGTGSFGRVMLVKHKateQYYAMKILDKQKvvklkqIEHTL 116  

                   rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld
                   +E +i+  +  + p +V+L  +  +          l++vmEy++gG   +
     fj02009   117 NEKRILQAV--NFPFLVRLEYAFKDN-------SNLYMVMEYVPGGEMFS 157  

                   yLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkv
                   +Lr+ ++ +s ++   +A QI    eYL+s  ++ RDL   N L+++++ 
     fj02009   158 HLRRIGR-FSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDHQGY 206  

                   vKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdg
                   + ++DFG ++ ++                  g+        +APE +  +
     fj02009   207 IQVTDFGFAKRVKGR-------TWTLC----GTPE-----YLAPEIILSK 240  

                   kFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlp
                    ++ + D W+ GVl++E+   G +P          +++++e++ +G   +
     fj02009   241 GYNKAVDWWALGVLIYEMAA-GYPPFFA-----DQPIQIYEKIVSG-KVR 283  

                   kPendlpiSsvtCPdelYdlMlqCWaedPedRPtFselverl<-*
                    P +         +++l dl +   + d  +R  F +l+      
     fj02009   284 FPSH--------FSSDLKDLLRNLLQVDLTKR--FGNLKNGV    315  

SM00220: domain 1 of 1, from 70 to 324: score 369.0, E = 2.8e-106
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril
                      +e  k+lG G+FG+V+l+++k t +++A+K++++++  + ++ e++l
     fj02009    70    FERKKTLGTGSFGRVMLVKHKATEQYYAMKILDkqkvvklkqiEHTL 116  

                   rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr
                   +E +iL+  + P++V+L ++f d+++ly+VmEy++G  G++f++l++ gr
     fj02009   117 NEKRILQAvNFPFLVRLEYAFKDnSNLYMVMEYVPG--GEMFSHLRRIGR 164  

                   rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK
                         +sE++arfy++Qi++  eYLHs+  i+RDLKPeN+L+d+++ + 
     fj02009   165 ------FSEpHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDHqgYIQ 208  

                   laDFGlArql....ttfvGTpeYmAPEvl...gYgkpavDiWSlGcilyE
                   ++DFG+A+++++++ t++GTpeY+APE++ ++gY+k avD+W+lG+++yE
     fj02009   209 VTDFGFAKRVkgrtWTLCGTPEYLAPEIIlskGYNK-AVDWWALGVLIYE 257  

                   lltGkpPFp..qldlifkkig..........SpeakdLikklLvkdPekR
                   +++G+pPF  +q+ +i++ki++++ + +++ S+++kdL+++lL++d +kR
     fj02009   258 MAAGYPPFFadQPIQIYEKIVsgkvrfpshfSSDLKDLLRNLLQVDLTKR 307  

                   lta.eaLedeldikaHPff<-*
                    +  +     +dik H +f   
     fj02009   308 FGNlKNGV--SDIKTHKWF    324  

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