# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj02169.fasta.nr -Q fj02169.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj02169, 103 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824261 sequences Expectation_n fit: rho(ln(x))= 4.4683+/-0.000176; mu= 7.0334+/- 0.010 mean_var=54.5626+/-10.660, 0's: 47 Z-trim: 50 B-trim: 0 in 0/67 Lambda= 0.173631 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62087210|dbj|BAD92052.1| Hypothetical protein D ( 103) 685 178.8 1.1e-43 gi|119568550|gb|EAW48165.1| fatty acid binding pro ( 120) 533 140.8 3.4e-32 gi|48146231|emb|CAG33338.1| FABP7 [Homo sapiens] ( 132) 533 140.9 3.7e-32 gi|3122076|sp|O15540.3|FABP7_HUMAN Fatty acid-bind ( 132) 533 140.9 3.7e-32 gi|12224842|emb|CAC21646.1| hypothetical protein [ ( 166) 533 140.9 4.4e-32 gi|55627408|ref|XP_527495.1| PREDICTED: fatty acid ( 132) 528 139.6 8.8e-32 gi|2605596|dbj|BAA23324.1| fatty acid binding prot ( 132) 528 139.6 8.8e-32 gi|15826067|pdb|1FDQ|A Chain A, Crystal Structure ( 131) 526 139.1 1.2e-31 gi|90082527|dbj|BAE90445.1| unnamed protein produc ( 132) 522 138.1 2.5e-31 gi|24987402|pdb|1JJX|A Chain A, Solution Structure ( 131) 521 137.8 2.9e-31 gi|62866607|gb|AAY17257.1| brain-type fatty acid-b ( 132) 515 136.3 8.4e-31 gi|149722925|ref|XP_001504260.1| PREDICTED: simila ( 132) 515 136.3 8.4e-31 gi|166897969|sp|Q09139.2|FABP7_BOVIN Fatty acid-bi ( 132) 510 135.1 2e-30 gi|73946307|ref|XP_533484.2| PREDICTED: similar to ( 132) 504 133.6 5.7e-30 gi|126310522|ref|XP_001369599.1| PREDICTED: simila ( 132) 503 133.3 6.8e-30 gi|58569048|gb|AAW79014.1| GekBS168P [Gekko japoni ( 132) 499 132.3 1.4e-29 gi|148673176|gb|EDL05123.1| fatty acid binding pro ( 155) 495 131.4 3.1e-29 gi|56269214|gb|AAH87470.1| LOC496060 protein [Xeno ( 132) 494 131.1 3.2e-29 gi|89268089|emb|CAJ83228.1| fatty acid binding pro ( 132) 491 130.3 5.4e-29 gi|47209311|emb|CAF90734.1| unnamed protein produc ( 132) 491 130.3 5.4e-29 gi|149038599|gb|EDL92888.1| fatty acid binding pro ( 130) 487 129.3 1.1e-28 gi|1706751|sp|P55051.2|FABP7_RAT Fatty acid-bindin ( 132) 487 129.3 1.1e-28 gi|462065|sp|Q05423.2|FABP7_CHICK Fatty acid-bindi ( 132) 486 129.1 1.3e-28 gi|84570141|dbj|BAE72542.1| brain-specific fatty a ( 132) 485 128.8 1.5e-28 gi|56709486|emb|CAI35910.1| fatty acid binding pro ( 132) 483 128.3 2.2e-28 gi|1706750|sp|P51880.2|FABP7_MOUSE Fatty acid-bind ( 132) 483 128.3 2.2e-28 gi|8809798|gb|AAF79948.1|AF237712_1 brain-type fat ( 132) 478 127.1 5.2e-28 gi|37537736|gb|AAQ92970.1| brain-type fatty acid-b ( 132) 454 121.1 3.3e-26 gi|47229947|emb|CAG10361.1| unnamed protein produc ( 132) 449 119.8 8e-26 gi|34783929|gb|AAH56855.1| MGC64521 protein [Xenop ( 131) 415 111.3 2.9e-23 gi|49257292|gb|AAH72965.1| MGC82505 protein [Xenop ( 131) 414 111.0 3.5e-23 gi|183212379|gb|ACC54852.1| fatty acid bindinG-pro ( 91) 412 110.4 3.7e-23 gi|227993|prf||1714344A fatty acid-binding protein ( 131) 404 108.5 2e-22 gi|59807594|gb|AAH90106.1| Fatty acid binding prot ( 131) 403 108.3 2.3e-22 gi|160774264|gb|AAI55023.1| Fatty acid binding pro ( 131) 403 108.3 2.3e-22 gi|119800|sp|P10790.2|FABPH_BOVIN Fatty acid-bindi ( 133) 402 108.0 2.8e-22 gi|20138311|sp|Q99P61.3|FABPH_SPETR Fatty acid-bin ( 133) 398 107.0 5.6e-22 gi|40804425|gb|AAR91708.1| muscle fatty acid bindi ( 133) 396 106.5 8e-22 gi|6729922|pdb|1BWY|A Chain A, Nmr Study Of Bovine ( 132) 395 106.3 9.4e-22 gi|39939390|gb|AAR32738.1| fatty acid-binding prot ( 133) 394 106.0 1.1e-21 gi|15072477|gb|AAK61550.1| heart-type fatty acid-b ( 132) 392 105.5 1.6e-21 gi|57043188|ref|XP_535331.1| PREDICTED: similar to ( 133) 391 105.3 1.9e-21 gi|111572506|gb|ABH10617.1| heart fatty acid-bindi ( 133) 389 104.8 2.7e-21 gi|2811080|sp|O13008.3|FABPH_ONCMY Fatty acid-bind ( 133) 389 104.8 2.7e-21 gi|49618768|gb|AAT67999.1| fatty acid-binding prot ( 133) 388 104.5 3.2e-21 gi|51267|emb|CAA33084.1| unnamed protein product [ ( 133) 386 104.0 4.5e-21 gi|149694139|ref|XP_001503955.1| PREDICTED: fatty ( 133) 385 103.8 5.4e-21 gi|2738188|gb|AAC60359.1| fatty acid binding prote ( 133) 385 103.8 5.4e-21 gi|2738184|gb|AAC60357.1| fatty acid binding prote ( 133) 385 103.8 5.4e-21 gi|2738182|gb|AAC60356.1| fatty acid binding prote ( 133) 385 103.8 5.4e-21 >>gi|62087210|dbj|BAD92052.1| Hypothetical protein DKFZp (103 aa) initn: 685 init1: 685 opt: 685 Z-score: 939.8 bits: 178.8 E(): 1.1e-43 Smith-Waterman score: 685; 100.000% identity (100.000% similar) in 103 aa overlap (1-103:1-103) 10 20 30 40 50 60 fj0216 RGERARMVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RGERARMVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT 10 20 30 40 50 60 70 80 90 100 fj0216 LSTFKNTEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE ::::::::::::::::::::::::::::::::::::::::::: gi|620 LSTFKNTEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE 70 80 90 100 >>gi|119568550|gb|EAW48165.1| fatty acid binding protein (120 aa) initn: 533 init1: 533 opt: 533 Z-score: 733.1 bits: 140.8 E(): 3.4e-32 Smith-Waterman score: 533; 100.000% identity (100.000% similar) in 82 aa overlap (7-88:1-82) 10 20 30 40 50 60 fj0216 RGERARMVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT 10 20 30 40 50 70 80 90 100 fj0216 LSTFKNTEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE :::::::::::::::::::::::::::: gi|119 LSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKM 60 70 80 90 100 110 >>gi|48146231|emb|CAG33338.1| FABP7 [Homo sapiens] (132 aa) initn: 533 init1: 533 opt: 533 Z-score: 732.5 bits: 140.9 E(): 3.7e-32 Smith-Waterman score: 533; 100.000% identity (100.000% similar) in 82 aa overlap (7-88:1-82) 10 20 30 40 50 60 fj0216 RGERARMVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|481 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT 10 20 30 40 50 70 80 90 100 fj0216 LSTFKNTEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE :::::::::::::::::::::::::::: gi|481 LSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIRDGKM 60 70 80 90 100 110 >>gi|3122076|sp|O15540.3|FABP7_HUMAN Fatty acid-binding (132 aa) initn: 533 init1: 533 opt: 533 Z-score: 732.5 bits: 140.9 E(): 3.7e-32 Smith-Waterman score: 533; 100.000% identity (100.000% similar) in 82 aa overlap (7-88:1-82) 10 20 30 40 50 60 fj0216 RGERARMVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|312 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT 10 20 30 40 50 70 80 90 100 fj0216 LSTFKNTEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE :::::::::::::::::::::::::::: gi|312 LSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKM 60 70 80 90 100 110 >>gi|12224842|emb|CAC21646.1| hypothetical protein [Homo (166 aa) initn: 533 init1: 533 opt: 533 Z-score: 731.1 bits: 140.9 E(): 4.4e-32 Smith-Waterman score: 533; 100.000% identity (100.000% similar) in 82 aa overlap (7-88:1-82) 10 20 30 40 50 60 fj0216 RGERARMVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT 10 20 30 40 50 70 80 90 100 fj0216 LSTFKNTEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE :::::::::::::::::::::::::::: gi|122 LSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKM 60 70 80 90 100 110 >>gi|55627408|ref|XP_527495.1| PREDICTED: fatty acid bin (132 aa) initn: 528 init1: 528 opt: 528 Z-score: 725.7 bits: 139.6 E(): 8.8e-32 Smith-Waterman score: 528; 98.780% identity (100.000% similar) in 82 aa overlap (7-88:1-82) 10 20 30 40 50 60 fj0216 RGERARMVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT ::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|556 MVEAFCATWKLTDSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT 10 20 30 40 50 70 80 90 100 fj0216 LSTFKNTEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE :::::::::::::::::::::::::::: gi|556 LSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKM 60 70 80 90 100 110 >>gi|2605596|dbj|BAA23324.1| fatty acid binding protein (132 aa) initn: 528 init1: 528 opt: 528 Z-score: 725.7 bits: 139.6 E(): 8.8e-32 Smith-Waterman score: 528; 98.780% identity (100.000% similar) in 82 aa overlap (7-88:1-82) 10 20 30 40 50 60 fj0216 RGERARMVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|260 MVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT 10 20 30 40 50 70 80 90 100 fj0216 LSTFKNTEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE :::::.:::::::::::::::::::::: gi|260 LSTFKDTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKM 60 70 80 90 100 110 >>gi|15826067|pdb|1FDQ|A Chain A, Crystal Structure Of H (131 aa) initn: 526 init1: 526 opt: 526 Z-score: 723.1 bits: 139.1 E(): 1.2e-31 Smith-Waterman score: 526; 100.000% identity (100.000% similar) in 81 aa overlap (8-88:1-81) 10 20 30 40 50 60 fj0216 RGERARMVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 VEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT 10 20 30 40 50 70 80 90 100 fj0216 LSTFKNTEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE :::::::::::::::::::::::::::: gi|158 LSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKM 60 70 80 90 100 110 >>gi|90082527|dbj|BAE90445.1| unnamed protein product [M (132 aa) initn: 522 init1: 522 opt: 522 Z-score: 717.6 bits: 138.1 E(): 2.5e-31 Smith-Waterman score: 522; 97.561% identity (100.000% similar) in 82 aa overlap (7-88:1-82) 10 20 30 40 50 60 fj0216 RGERARMVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT ::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|900 MVEAFCATWKLTDSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT 10 20 30 40 50 70 80 90 100 fj0216 LSTFKNTEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE :::::::::::.:::::::::::::::: gi|900 LSTFKNTEISFHLGEEFDETTADDRNCKSVVSLDGDKLVHVQKWDGKETNFVREIKDGKM 60 70 80 90 100 110 >>gi|24987402|pdb|1JJX|A Chain A, Solution Structure Of (131 aa) initn: 521 init1: 521 opt: 521 Z-score: 716.3 bits: 137.8 E(): 2.9e-31 Smith-Waterman score: 521; 100.000% identity (100.000% similar) in 80 aa overlap (9-88:2-81) 10 20 30 40 50 60 fj0216 RGERARMVEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|249 XEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRT 10 20 30 40 50 70 80 90 100 fj0216 LSTFKNTEISFQLGEEFDETTADDRNCKVRNCFFFRVGMGRGE :::::::::::::::::::::::::::: gi|249 LSTFKNTEISFQLGEEFDETTADDRNCKSVVSLDGDKLVHIQKWDGKETNFVREIKDGKM 60 70 80 90 100 110 103 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 06:21:27 2008 done: Sun Aug 10 06:24:36 2008 Total Scan time: 482.110 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]