hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-06243774/chunk_1/iprscan-20080810-06243774.nocrc
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Query sequence: fj02169
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00061.13.fs Lipocalin / cytosolic fatty-acid binding pr    93.1      8e-25   1
PF00061.13.ls Lipocalin / cytosolic fatty-acid binding pr    37.4    4.6e-08   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00061.13.fs   1/1      12    88 ..     1    95 [.    93.1    8e-25
PF00061.13.ls   1/1      12   102 ..     1   162 []    37.4  4.6e-08

Alignments of top-scoring domains:
PF00061.13.fs: domain 1 of 1, from 12 to 88: score 93.1, E = 8e-25
                   *->sGkWylvasAsSEnfeefmkelgVgfatRKparvykptieitkqeGd
                        +W+l  s   +nf+e+mk+lgVgfatR++++v+kpt++i+ qeGd
     fj02169    12    CATWKLTNS---QNFDEYMKALGVGFATRQVGNVTKPTVIIS-QEGD 54   

                   levtftikriGltngtCktttivfkkgeepgeftanypadpwdGrkvk<-
                    +v+  i+    t +t+k+t+i+f++gee++e+ta       d+r++k  
     fj02169    55 -KVV--IR----TLSTFKNTEISFQLGEEFDETTA-------DDRNCK   88   

                   *
                    
     fj02169     -   -    

PF00061.13.ls: domain 1 of 1, from 12 to 102: score 37.4, E = 4.6e-08
                   *->sGkWylvasAsSEnfeefmkelgVgfatRKparvykptieitkqeGd
                        +W+l  s   +nf+e+mk+lgVgfatR++++v+kpt++i+ qeGd
     fj02169    12    CATWKLTNS---QNFDEYMKALGVGFATRQVGNVTKPTVIIS-QEGD 54   

                   levtftikriGltngtCktttivfkkgeepgeftanypadpwdGrkvksv
                    +v+  i+    t +t+k+t+i+f++gee++e+ta       d+r+    
     fj02169    55 -KVV--IR----TLSTFKNTEISFQLGEEFDETTA-------DDRN---- 86   

                   vttdydnylilyqcktkegghtrmakLlgRgpelspeikeeFeGdklvkt
                    ++ +    ++++                                ++   
     fj02169    87 CKVRN----CFFF--------------------------------RV--- 97   

                   lgiddenivrlykrd<-*
                    g++         r+   
     fj02169    98 -GMG---------RG    102  

//