hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-06301343/chunk_1/iprscan-20080810-06301343.nocrc
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Query sequence: fj02250
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00036.22.ls EF hand                                         62.2    1.6e-15   4
PF00036.22.fs EF hand                                         54.2    9.7e-14   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00036.22.fs   1/4      76   104 ..     1    29 []    19.3  0.00032
PF00036.22.fs   2/4     188   216 ..     1    29 []    18.5  0.00056
PF00036.22.fs   3/4     251   279 ..     1    29 []    15.7   0.0031
PF02809.10.fs   2/2     900   917 ..     1    18 []    11.0     0.12
PF02809.10.ls   2/2     900   917 ..     1    18 []    13.0     0.46

Alignments of top-scoring domains:
PF00036.22.fs: domain 1 of 4, from 76 to 104: score 19.3, E = 0.00032
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       l ++++++D+Dg G ++++Ef  al+ +   
     fj02250    76    ILGKIWDLADTDGKGILNKQEFFVALRLV    104  

PF00036.22.fs: domain 2 of 4, from 188 to 216: score 18.5, E = 0.00056
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       l +++++ D D+DG ++++Ef  a+  +   
     fj02250   188    ILGRVWELSDIDHDGMLDRDEFAVAMFLV    216  

PF00036.22.fs: domain 3 of 4, from 251 to 279: score 15.7, E = 0.0031
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      + +e+F + DkD DG++s  E ++++ k+   
     fj02250   251    KYDEIFLKTDKDMDGFVSGLEVREIFLKT    279  

PF02809.10.fs: domain 2 of 2, from 900 to 917: score 11.0, E = 0.12
                   *->mdEEedLqlALalSlqea<-*
                       +E edL+lA+alS +e    
     fj02250   900    QQEQEDLELAIALSKSEI    917  

PF02809.10.ls: domain 2 of 2, from 900 to 917: score 13.0, E = 0.46
                   *->mdEEedLqlALalSlqea<-*
                       +E edL+lA+alS +e    
     fj02250   900    QQEQEDLELAIALSKSEI    917  

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