hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-06301343/chunk_1/iprscan-20080810-06301343.nocrc
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Query sequence: fj02250
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00027                                                 497.2   7.5e-145   3
SM00054                                                  54.9    1.1e-11   3
SM00726                                                  36.8    2.8e-06   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00027    1/3      32   127 ..     1    98 []   124.5  1.1e-32
SM00054    1/3      76   104 ..     1    29 []    24.3    0.017
SM00027    2/3     145   239 ..     1    98 []   193.1  2.7e-53
SM00054    2/3     188   216 ..     1    29 []    20.4     0.25
SM00027    3/3     241   337 ..     1    98 []   179.6    3e-49
SM00054    3/3     251   279 ..     1    29 []    10.1      8.9
SM00726    1/3     466   486 ..     1    20 []     1.8  8.2e+02
SM00726    2/3     875   894 ..     1    20 []    17.0      2.7
SM00726    3/3     901   920 .]     1    20 []    18.1      1.3

Alignments of top-scoring domains:
SM00027: domain 1 of 3, from 32 to 127: score 124.5, E = 1.1e-32
                   *->eWaispedkakYdqiFrsldpdqdGtvsGaqakpiflkSgLPqtlLa
                         + ++ ++ Y++++r+ d+++ G+v  ++a++++ kSgLP+ +L+
     fj02250    32    SLTQLSSGNPVYEKYYRQVDTGNTGRVLASDAAAFLKKSGLPDLILG 78   

                   kIWaLaDidkdGeLdrePEFalAmhLiyrklnGgepiPasLPpelippsk
                   kIW+LaD+d++G L+++ EF++A++L+++++nG  +++ s  +  +pp++
     fj02250    79 KIWDLADTDGKGILNKQ-EFFVALRLVACAQNG-LEVSLSSLNLAVPPPR 126  

                   r<-*
                   +   
     fj02250   127 F    127  

SM00054: domain 1 of 3, from 76 to 104: score 24.3, E = 0.017
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       l ++++++D+Dg G ++++Ef ++l+ +   
     fj02250    76    ILGKIWDLADTDGKGILNKQEFFVALRLV    104  

SM00027: domain 2 of 3, from 145 to 239: score 193.1, E = 2.7e-53
                   *->eWaispedkakYdqiFrsldpdqdGtvsGaqakpiflkSgLPqtlLa
                      +Wa+ pedkakYd+iF+sl+p ++G++sG+++kp++l+S+LP ++L+
     fj02250   145    PWAVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSKLPVDILG 190  

                   kIWaLaDidkdGeLdrePEFalAmhLiyrklnGgepiPasLPpelippsk
                   ++W+L+Did+dG+Ldr+ EFa+Am+L+y++l++ ep+P+sLPp+l+ppsk
     fj02250   191 RVWELSDIDHDGMLDRD-EFAVAMFLVYCALEK-EPVPMSLPPALVPPSK 238  

                   r<-*
                   r   
     fj02250   239 R    239  

SM00054: domain 2 of 3, from 188 to 216: score 20.4, E = 0.25
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                       l +++++ D D+dG +d +Ef +++  +   
     fj02250   188    ILGRVWELSDIDHDGMLDRDEFAVAMFLV    216  

SM00027: domain 3 of 3, from 241 to 337: score 179.6, E = 3e-49
                   *->eWaispedkakYdqiFrsldpdqdGtvsGaqakpiflkSgLPqtlLa
                       W++sp++kakYd+iF ++d+d+dG+vsG ++++iflk+gLP+tlLa
     fj02250   241    TWVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLA 287  

                   kIWaLaDidkdGeLdrePEFalAmhLiyrklnGgepiPasLPpelippsk
                   +IW+L+D++++G+L ++ +FalA+hLi +kl +g+++P++L pe+ipps+
     fj02250   288 HIWSLCDTKDCGKLSKD-QFALAFHLISQKLIKGIDPPHVLTPEMIPPSD 336  

                   r<-*
                   r   
     fj02250   337 R    337  

SM00054: domain 3 of 3, from 251 to 279: score 10.1, E = 8.9
                   *->elkeaFrefDkDgdGkIdfeEfkallksl<-*
                      + +e+F + DkD dG+++  E ++++ +    
     fj02250   251    KYDEIFLKTDKDMDGFVSGLEVREIFLKT    279  

SM00726: domain 1 of 3, from 466 to 486: score 1.8, E = 8.2e+02
                   *->dEdedLqlAlel.Slqeaeee<-*
                        +e+L++A e+ S+ ++e +   
     fj02250   466    TYEEELAKAREElSRLQQETA    486  

SM00726: domain 2 of 3, from 875 to 894: score 17.0, E = 2.7
                   *->dEdedLqlAlelSlqeaeee<-*
                      +E++++++A ++S +e+e++   
     fj02250   875    SEEDMIEWAKRESEREEEQR    894  

SM00726: domain 3 of 3, from 901 to 920: score 18.1, E = 1.3
                   *->dEdedLqlAlelSlqeaeee<-*
                      +E edL+lA++lS++e +e+   
     fj02250   901    QEQEDLELAIALSKSEISEA    920  

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