hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-06362128/chunk_1/iprscan-20080810-06362128.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj02255 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00008.17.ls EGF-like domain 295.1 1.2e-85 9 PF00008.17.fs EGF-like domain 284.3 2.1e-82 9 PF07974.3.ls EGF-like domain 102.0 1.7e-27 7 PF07974.3.fs EGF-like domain 91.3 1.8e-24 8 PF07645.6.fs Calcium binding EGF domain 74.4 7.8e-22 5 PF07645.6.ls Calcium binding EGF domain 61.7 2.3e-15 4 PF00053.14.fs Laminin EGF-like (Domains III and V) 19.2 6.6e-05 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00008.17.fs 2/9 99 132 .. 1 38 [] 38.5 6.7e-10 PF00008.17.ls 2/9 99 132 .. 1 38 [] 40.4 5.9e-09 PF00008.17.ls 3/9 139 170 .. 1 38 [] 34.2 4.3e-07 PF00008.17.fs 3/9 139 170 .. 1 38 [] 32.4 3.6e-08 PF00008.17.ls 4/9 177 208 .. 1 38 [] 45.5 1.7e-10 PF00008.17.fs 4/9 177 208 .. 1 38 [] 43.6 2.5e-11 PF07645.6.ls 3/4 212 246 .. 1 55 [] 25.8 0.00014 PF07645.6.fs 3/5 212 246 .. 1 55 [] 25.2 6.9e-07 PF00008.17.ls 5/9 215 246 .. 1 38 [] 43.0 9.6e-10 PF00008.17.fs 5/9 215 246 .. 1 38 [] 41.2 1.2e-10 PF00008.17.ls 6/9 253 284 .. 1 38 [] 37.9 3.3e-08 PF00008.17.fs 6/9 253 284 .. 1 38 [] 36.1 3.3e-09 PF00008.17.fs 7/9 291 323 .. 1 38 [] 29.7 2e-07 PF00008.17.ls 7/9 291 323 .. 1 38 [] 31.6 2.6e-06 PF07974.3.ls 7/7 330 361 .. 1 37 [] 24.3 0.00041 PF00008.17.ls 8/9 330 361 .. 1 38 [] 35.2 2.2e-07 PF00008.17.fs 8/9 330 361 .. 1 38 [] 33.3 1.9e-08 PF00008.17.fs 9/9 368 417 .. 1 36 [. 26.5 1.6e-06 PF00008.17.ls 9/9 368 419 .. 1 38 [] 22.7 0.0012 Alignments of top-scoring domains: PF00008.17.fs: domain 2 of 9, from 99 to 132: score 38.5, E = 6.7e-10 *->CspnngpCsngGtCvdtp..ggytCeCppGyfllytGkrC<-* C +n pC++ +tCv+tp++ ++ C+CppG y+G C fj02255 99 CFSN--PCQGSATCVNTPgeRSFLCKCPPG----YSGTIC 132 PF00008.17.ls: domain 2 of 9, from 99 to 132: score 40.4, E = 5.9e-09 *->CspnngpCsngGtCvdtp..ggytCeCppGyfllytGkrC<-* C +n pC++ +tCv+tp++ ++ C+CppG y+G C fj02255 99 CFSN--PCQGSATCVNTPgeRSFLCKCPPG----YSGTIC 132 PF00008.17.ls: domain 3 of 9, from 139 to 170: score 34.2, E = 4.3e-07 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C +n C++gG+C++ p + C+Cp G y+G++C fj02255 139 CGKN--SCQHGGICHQDPIYPVCICPAG----YAGRFC 170 PF00008.17.fs: domain 3 of 9, from 139 to 170: score 32.4, E = 3.6e-08 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C +n C++gG+C++ p + C+Cp G y+G++C fj02255 139 CGKN--SCQHGGICHQDPIYPVCICPAG----YAGRFC 170 PF00008.17.ls: domain 4 of 9, from 177 to 208: score 45.5, E = 1.7e-10 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C++ pC+ng+ C+d+ +gy+C+C pG y+G++C fj02255 177 CASS--PCQNGAVCQDGIDGYSCFCVPG----YQGRHC 208 PF00008.17.fs: domain 4 of 9, from 177 to 208: score 43.6, E = 2.5e-11 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C++ pC+ng+ C+d+ +gy+C+C pG y+G++C fj02255 177 CASS--PCQNGAVCQDGIDGYSCFCVPG----YQGRHC 208 PF07645.6.ls: domain 3 of 4, from 212 to 246: score 25.8, E = 0.00014 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse vDECa+ + C + ++C+N+iG ++C Cp++Y+ fj02255 212 -VDECAS---DPC---KNEATCLNEIGRYTCI----CPHNYS----- 242 nnedgtnC<-* g nC fj02255 243 ----GVNC 246 PF07645.6.fs: domain 3 of 5, from 212 to 246: score 25.2, E = 6.9e-07 *->DvDECadgtlhnCdDpdantvCvNtiGSFeCvarkdCpeGYeVpvse vDECa+ + C + ++C+N+iG ++C Cp++Y+ fj02255 212 -VDECAS---DPC---KNEATCLNEIGRYTCI----CPHNYS----- 242 nnedgtnC<-* g nC fj02255 243 ----GVNC 246 PF00008.17.ls: domain 5 of 9, from 215 to 246: score 43.0, E = 9.6e-10 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+++ pC+n +tC++ g ytC+Cp+ y+G +C fj02255 215 CASD--PCKNEATCLNEIGRYTCICPHN----YSGVNC 246 PF00008.17.fs: domain 5 of 9, from 215 to 246: score 41.2, E = 1.2e-10 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+++ pC+n +tC++ g ytC+Cp+ y+G +C fj02255 215 CASD--PCKNEATCLNEIGRYTCICPHN----YSGVNC 246 PF00008.17.ls: domain 6 of 9, from 253 to 284: score 37.9, E = 3.3e-08 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C ++ pC+ng+tC+d g y+C+C+pG + G++C fj02255 253 CWSQ--PCLNGATCQDALGAYFCDCAPG----FLGDHC 284 PF00008.17.fs: domain 6 of 9, from 253 to 284: score 36.1, E = 3.3e-09 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C ++ pC+ng+tC+d g y+C+C+pG + G++C fj02255 253 CWSQ--PCLNGATCQDALGAYFCDCAPG----FLGDHC 284 PF00008.17.fs: domain 7 of 9, from 291 to 323: score 29.7, E = 2e-07 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+++ pC++gG Cvd+++ y+C C+ ++tG +C fj02255 291 CASQ--PCLHGGLCVDGENRYSCNCTGS---GFTGTHC 323 PF00008.17.ls: domain 7 of 9, from 291 to 323: score 31.6, E = 2.6e-06 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+++ pC++gG Cvd+++ y+C C+ ++tG +C fj02255 291 CASQ--PCLHGGLCVDGENRYSCNCTGS---GFTGTHC 323 PF07974.3.ls: domain 7 of 7, from 330 to 361: score 24.3, E = 0.00041 *->C....CngshGtCvspngtstpcgkCvCdsgyedkyqGadC<-* C +++C++ + tC++ + C+C++g y+Ga+C fj02255 330 CwskpCHN-NATCEDSVD----NYTCHCWPG----YTGAQC 361 PF00008.17.ls: domain 8 of 9, from 330 to 361: score 35.2, E = 2.2e-07 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C + pC+n++tC d+ + ytC+C pG ytG +C fj02255 330 CWSK--PCHNNATCEDSVDNYTCHCWPG----YTGAQC 361 PF00008.17.fs: domain 8 of 9, from 330 to 361: score 33.3, E = 1.9e-08 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C + pC+n++tC d+ + ytC+C pG ytG +C fj02255 330 CWSK--PCHNNATCEDSVDNYTCHCWPG----YTGAQC 361 PF00008.17.fs: domain 9 of 9, from 368 to 417: score 26.5, E = 1.6e-06 *->CspnngpCsngGtCvdtp....................ggytCeCpp C++n pC+ +G+Cv++ ++++ ++ ++ +++ + ++ +gy C+C+p fj02255 368 CNSN--PCQSNGECVELSsekqygritglpssfsyheaSGYVCICQP 412 GyfllytGk<-* G +tG+ fj02255 413 G----FTGE 417 PF00008.17.ls: domain 9 of 9, from 368 to 419: score 22.7, E = 0.0012 *->CspnngpCsngGtCvdtp....................ggytCeCpp C++n pC+ +G+Cv++ ++++ ++ ++ +++ + ++ +gy C+C+p fj02255 368 CNSN--PCQSNGECVELSsekqygritglpssfsyheaSGYVCICQP 412 GyfllytGkrC<-* G +tG+ fj02255 413 G----FTGEAK 419 //