hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-06362128/chunk_1/iprscan-20080810-06362128.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj02255 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00179 266.1 2.7e-75 8 SM00181 248.2 6.7e-70 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00181 1/9 58 93 .. 1 32 [] 0.6 2.2e+02 SM00179 1/8 89 133 .. 1 34 [] 25.3 0.0012 SM00181 2/9 98 133 .. 1 32 [] 35.6 6.9e-06 SM00181 3/9 138 171 .. 1 32 [] 22.2 0.073 SM00179 2/8 139 171 .. 1 34 [] 8.6 0.14 SM00179 3/8 173 209 .. 1 34 [] 52.2 6.6e-11 SM00181 4/9 176 209 .. 1 32 [] 41.7 9.9e-08 SM00179 4/8 211 247 .. 1 34 [] 48.7 7.7e-10 SM00181 5/9 214 247 .. 1 32 [] 36.7 3.1e-06 SM00179 5/8 249 285 .. 1 34 [] 57.0 2.4e-12 SM00181 6/9 252 285 .. 1 32 [] 34.2 1.8e-05 SM00179 6/8 287 324 .. 1 34 [] 41.4 1.2e-07 SM00181 7/9 290 324 .. 1 32 [] 33.7 2.5e-05 SM00181 8/9 329 362 .. 1 32 [] 26.0 0.0052 SM00179 7/8 330 362 .. 1 34 [] 29.6 0.00036 SM00179 8/8 364 420 .. 1 34 [] 3.2 0.66 SM00181 9/9 367 420 .. 1 32 [] 17.6 1.8 Alignments of top-scoring domains: SM00181: domain 1 of 9, from 58 to 93: score 0.6, E = 2.2e+02 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg...rCe<-* C+++ C+n+ tC + ++ C+C + ++ C fj02255 58 RCLsnSCQNNS-----TCKdfskDNDCsCS-DTANNldkDCD 93 SM00179: domain 1 of 8, from 89 to 133: score 25.3, E = 0.0012 *->DiDEC..........pCqnGGptgtCiN.vG..SYrC.CppGyt.rn D D C++ +++ ++pCq + tC+N++G++S+ C+CppGy+++ fj02255 89 DKD-CdnmkdpcfsnPCQGSA---TCVNtPGerSFLCkCPPGYSgTI 131 Ce<-* Ce fj02255 132 CE 133 SM00181: domain 2 of 9, from 98 to 133: score 35.6, E = 6.9e-06 *->eCa..pCsnGgtEqnGtCi......sytC.CpgpGytg.rCe<-* +C ++pC+ +tC+++++++s+ C+Cp pGy+g+ Ce fj02255 98 PCFsnPCQGS-----ATCVntpgerSFLCkCP-PGYSGtICE 133 SM00181: domain 3 of 9, from 138 to 171: score 22.2, E = 0.073 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C ++ C++G G+C+ ++ + C Cp +Gy g+ Ce fj02255 138 SCGknSCQHG-----GICHqdpiYPVCiCP-AGYAGrFCE 171 SM00179: domain 2 of 8, from 139 to 171: score 8.6, E = 0.14 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* C+++ Cq+GG +C+ ++ C Cp+Gy +r Ce fj02255 139 ----CgknSCQHGG---ICHQdPIYPVCiCPAGYAgRFCE 171 SM00179: domain 3 of 8, from 173 to 209: score 52.2, E = 6.6e-11 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* D DEC ++pCqnG+ +C++++ +Y+C C pGy++r+C+ fj02255 173 DHDECassPCQNGA---VCQDgIDGYSCfCVPGYQgRHCD 209 SM00181: domain 4 of 9, from 176 to 209: score 41.7, E = 9.9e-08 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* eCa++pC+nG ++C+++ ++y+C C pGy+g++C fj02255 176 ECAssPCQNG-----AVCQdgidGYSCfCV-PGYQGrHCD 209 SM00179: domain 4 of 8, from 211 to 247: score 48.7, E = 7.7e-10 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* +DEC ++pC n + tC N++G Y+C Cp y++ nCe fj02255 211 EVDECasdPCKNEA---TCLNeIGRYTCiCPHNYSgVNCE 247 SM00181: domain 5 of 9, from 214 to 247: score 36.7, E = 3.1e-06 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* eCa++pC n +tC+++ + ytC Cp + y+g +Ce fj02255 214 ECAsdPCKNE-----ATCLneigRYTCiCP-HNYSGvNCE 247 SM00179: domain 5 of 8, from 249 to 285: score 57.0, E = 2.4e-12 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* iDEC ++pC nG+ tC++ G Y C+C pG+ + +Ce fj02255 249 EIDECwsqPCLNGA---TCQDaLGAYFCdCAPGFLgDHCE 285 SM00181: domain 6 of 9, from 252 to 285: score 34.2, E = 1.8e-05 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* eC ++pC nG +tC++ + y C+C+ pG+ g++Ce fj02255 252 ECWsqPCLNG-----ATCQdalgAYFCdCA-PGFLGdHCE 285 SM00179: domain 6 of 8, from 287 to 324: score 41.4, E = 1.2e-07 *->DiDEC...pCqnGGptgtCiN.vGSYrC.Cpp.Gyt.rnCe<-* + DEC ++pC +GG C+++++ Y+C+C +G+t+++Ce fj02255 287 NTDECasqPCLHGG---LCVDgENRYSCnCTGsGFTgTHCE 324 SM00181: domain 7 of 9, from 290 to 324: score 33.7, E = 2.5e-05 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* eCa++pC +G G C+++++ y+C+C g G+tg++Ce fj02255 290 ECAsqPCLHG-----GLCVdgenRYSCnCTGSGFTGtHCE 324 SM00181: domain 8 of 9, from 329 to 362: score 26.0, E = 0.0052 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C ++pC+n+ +tC ++ + ytC+C pGytg +Ce fj02255 329 LCWskPCHNN-----ATCEdsvdNYTChCW-PGYTGaQCE 362 SM00179: domain 7 of 8, from 330 to 362: score 29.6, E = 0.00036 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* C ++pC+n++ tC+++v Y+C+C pGyt+ +Ce fj02255 330 ----CwskPCHNNA---TCEDsVDNYTChCWPGYTgAQCE 362 SM00179: domain 8 of 8, from 364 to 420: score 3.2, E = 0.66 *->DiDEC...pCqnGGptgtCi....................N.vGSYr D +EC+++pCq +G C++ +++++ ++ ++ +++ + + +Y fj02255 364 DLNECnsnPCQSNG---ECVelssekqygritglpssfsyHeASGYV 407 C.CppGyt.rnCe<-* C C+pG+t+ e fj02255 408 CiCQPGFTgEAKE 420 SM00181: domain 9 of 9, from 367 to 420: score 17.6, E = 1.8 *->eCa..pCsnGgtEqnGtCi........................sytC eC ++pC+ + G+C++ ++++ ++ ++ +++ + ++ ++y C fj02255 367 ECNsnPCQSN-----GECVelssekqygritglpssfsyheasGYVC 408 .CpgpGytg.rCe<-* C+ pG+tg+ e fj02255 409 iCQ-PGFTGeAKE 420 //