hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-06475925/chunk_1/iprscan-20080810-06475925.nocrc
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Query sequence: fj02593
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00617.10.fs RasGEF domain                                  108.9    1.4e-29   1
PF00130.12.fs Phorbol esters/diacylglycerol binding domain    75.6    2.5e-20   1
PF00130.12.ls Phorbol esters/diacylglycerol binding domain    77.5    3.8e-20   1
PF00617.10.ls RasGEF domain                                   67.5      4e-17   1
PF00036.22.fs EF hand                                         32.7    7.2e-08   2
PF00036.22.ls EF hand                                         25.3    0.00021   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00617.10.ls   1/1       2   153 ..     1   227 []    67.5    4e-17
PF00617.10.fs   1/1      16   153 ..    60   227 .]   108.9  1.4e-29
PF00036.22.fs   1/2     207   235 ..     1    29 []    22.4  4.5e-05
PF00036.22.fs   2/2     239   262 ..     6    29 .]    10.3    0.097
PF00130.12.ls   1/1     275   327 ..     1    55 []    77.5  3.8e-20
PF00130.12.fs   1/1     275   327 ..     1    55 []    75.6  2.5e-20

Alignments of top-scoring domains:
PF00617.10.ls: domain 1 of 1, from 2 to 153: score 67.5, E = 4e-17
                   *->LlldplelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkksfk
                                               + ++                  
     fj02593     2    ------------------------VNSCVK----------------- 7    

                   vkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRaev
                     n   p+    i++ N  + +v  ++l+             +p  Raev
     fj02593     8 -EN---PTMERSIALCNGISQWVQLMVLSRP-----------TPQLRAEV 42   

                   iqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqslklI
                     kfIqVA+++++L+NFn+l+a+i +L++s+I+RLk T + vp +  k+ 
     fj02593    43 FIKFIQVAQKLHQLQNFNTLMAVIGGLCHSSISRLKETSSHVPHEINKV- 91   

                   feeLnkLmdsdrNfsnyRelLksigplappnLdddfvraPCVPFfGvYLs
                   + e+ +L++s+rN+ nyR+    ++++              +P +Gv L+
     fj02593    92 LGEMTELLSSSRNYDNYRRAYGECTDF-------------KIPILGVHLK 128  

                   DLtfleeGnpdyleekKINtnlvNFsKrrk<-*
                   DL  l+e++pdyle     +++vN +K      
     fj02593   129 DLISLYEAMPDYLE-----DGKVNVHKLLA    153  

PF00617.10.fs: domain 1 of 1, from 16 to 153: score 108.9, E = 1.4e-29
                   *->iknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRaeviqkfIqVAd
                      i++ N  + +v  ++l+             +p  Raev  kfIqVA+
     fj02593    16    IALCNGISQWVQLMVLSRP-----------TPQLRAEVFIKFIQVAQ 51   

                   hcReLnNFnSllaIisALysspIyRLkkTWekvppqslklIfeeLnkLmd
                   ++++L+NFn+l+a+i +L++s+I+RLk T + vp +  k+ + e+ +L++
     fj02593    52 KLHQLQNFNTLMAVIGGLCHSSISRLKETSSHVPHEINKV-LGEMTELLS 100  

                   sdrNfsnyRelLksigplappnLdddfvraPCVPFfGvYLsDLtfleeGn
                   s+rN+ nyR+    ++++              +P +Gv L+DL  l+e++
     fj02593   101 SSRNYDNYRRAYGECTDF-------------KIPILGVHLKDLISLYEAM 137  

                   pdyleekKINtnlvNFsKrrk<-*
                   pdyle     +++vN +K      
     fj02593   138 PDYLE-----DGKVNVHKLLA    153  

PF00036.22.fs: domain 1 of 2, from 207 to 235: score 22.4, E = 4.5e-05
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      ++  +Fk +D D+DG+Is eEf ++ +++   
     fj02593   207    RAPSVFKNYDHDQDGYISQEEFEKIAASF    235  

PF00036.22.fs: domain 2 of 2, from 239 to 262: score 10.3, E = 0.097
                   *->FkefDkDgDGkIsfeEfkaalkkl<-*
                      F ++DkD+ G Is++E  a++++    
     fj02593   239    FCVMDKDREGLISRDEITAYFMRA    262  

PF00130.12.ls: domain 1 of 1, from 275 to 327: score 77.5, E = 3.8e-20
                   *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek
                      H+F+++ t+ +ptfCd C+ flwg  +kqG++C +C++n+Hk+C  +
     fj02593   275    HNFQET-TYLKPTFCDNCAGFLWG-VIKQGYRCKDCGMNCHKQCKDL 319  

                   VppeCgcg<-*
                   V+ eC+     
     fj02593   320 VVFECKKR    327  

PF00130.12.fs: domain 1 of 1, from 275 to 327: score 75.6, E = 2.5e-20
                   *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek
                      H+F+++ t+ +ptfCd C+ flwg  +kqG++C +C++n+Hk+C  +
     fj02593   275    HNFQET-TYLKPTFCDNCAGFLWG-VIKQGYRCKDCGMNCHKQCKDL 319  

                   VppeCgcg<-*
                   V+ eC+     
     fj02593   320 VVFECKKR    327  

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