hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-06475925/chunk_1/iprscan-20080810-06475925.nocrc
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Query sequence: fj02593
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00147                                                 244.7    7.4e-69   1
SM00109                                                  68.6    8.1e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00147    1/1       1   205 [.     1   261 []   244.7  7.4e-69
SM00109    1/1     275   324 ..     1    61 []    68.6  8.1e-16

Alignments of top-scoring domains:
SM00147: domain 1 of 1, from 1 to 205: score 244.7, E = 7.4e-69
                   *->lllldpeelAeQLTlldfelFrkIepsEllgsvwgkrskkspsplap
                                                      + + + k++p     
     fj02593     1    --------------------------------LVNSCVKENP----- 10   

                   qnleafierfNevsnwVateIlkqttlkpkkRaevlskFIkVAkhcreLn
                    ++e++i+++N +s+wV+ ++l+ +t  p+ Raev+ kFI+VA+++++L+
     fj02593    11 -TMERSIALCNGISQWVQLMVLSRPT--PQLRAEVFIKFIQVAQKLHQLQ 57   

                   NFnSlmAIvsaLssspIsRLkkTWeklsskykklfeeLeelldpserNfk
                   NFn+lmA++++L++s+IsRLk+T +++++++ k++ e++ell++s rN+ 
     fj02593    58 NFNTLMAVIGGLCHSSISRLKETSSHVPHEINKVLGEMTELLSSS-RNYD 106  

                   nYReaLkscnkspnvqppcvPflGvyLkDLtfidegnpdflengtkglvN
                   nYR+a  +c        +++P+lGv+LkDL+ ++e++pd+le+   g+vN
     fj02593   107 NYRRAYGECT------DFKIPILGVHLKDLISLYEAMPDYLED---GKVN 147  

                   FeKrrkiakilreirqlqsacqpynlkpnrndiqellrasrplevlpeee
                    +K+  + ++++e+ qlq+  +  +l++n +d+ +ll+ s  l+ +++e+
     fj02593   148 VHKLLALYNHISELVQLQE--VAPPLEAN-KDLVHLLTLS--LDLYYTED 192  

                   delyelSlriEPrv<-*
                    e+yelS  +EPr+   
     fj02593   193 -EIYELSYAREPRN    205  

SM00109: domain 1 of 1, from 275 to 324: score 68.6, E = 8.1e-16
                   *->Hkfvfrtf.kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkkC
                      H+f+++t+ kptfCd C  ++wg+ kq     g+rC +C+++cHk+C
     fj02593   275    HNFQETTYlKPTFCDNCAGFLWGVIKQ-----GYRCKDCGMNCHKQC 316  

                   aekvpaqshksglsC<-*
                   ++ v          C   
     fj02593   317 KDLVVF-------EC    324  

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