hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-06534369/chunk_1/iprscan-20080810-06534369.nocrc
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Query sequence: fj02793
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
TIGR00229   sensory_box: PAS domain S-box                27.9    1.2e-05   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
TIGR00229     1/1      50   177 ..     1   130 []    27.9  1.2e-05

Alignments of top-scoring domains:
TIGR00229: domain 1 of 1, from 50 to 177: score 27.9, E = 1.2e-05
                   *->reseeryraifesspdaiivvdleGnilyvnpafeelfGysaeellG
                          +r+     +   +   v     ++y +++f++l+G+s++e++ 
     fj02793    50    DTIATRFDGTHSNFVLGNAQVAGLFPVVYCSDGFCDLTGFSRAEVMQ 96   

                   rnvle.lipeedreelrerierlletgerepvseerrvlgrrkdGseiwv
                   r+   +++  +d  el + + r     e++ +  e  +  +rk G  +w+
     fj02793    97 RGCACsFLYGPDTSELVRQQIRKAL-DEHKEFKAELIL--YRKSGLPFWC 143  

                   evsvspirdsnggvlgvlgivrDiterkeaeeal<-*
                   ++ v pi ++ g+v  +l +++Di+e k+        
     fj02793   144 LLDVIPIKNEKGEVALFLVSHKDISETKNRGGPD    177  

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