# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ofj02796.fasta.nr -Q fj02796.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 fj02796, 122 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824873 sequences Expectation_n fit: rho(ln(x))= 4.1178+/-0.000179; mu= 8.1017+/- 0.010 mean_var=57.6770+/-11.260, 0's: 42 Z-trim: 43 B-trim: 0 in 0/66 Lambda= 0.168878 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62087968|dbj|BAD92431.1| UDP-Gal:betaGlcNAc bet ( 122) 825 208.9 1.3e-52 >>gi|62087968|dbj|BAD92431.1| UDP-Gal:betaGlcNAc beta 1, (122 aa) initn: 825 init1: 825 opt: 825 Z-score: 1099.6 bits: 208.9 E(): 1.3e-52 Smith-Waterman score: 825; 100.000% identity (100.000% similar) in 122 aa overlap (1-122:1-122) 10 20 30 40 50 60 fj0279 SECSTTMMSNRNLYMRNVWIIFASRIVYLKQNYGYLSQIVSFILKCHFYGNIDNTNDHKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SECSTTMMSNRNLYMRNVWIIFASRIVYLKQNYGYLSQIVSFILKCHFYGNIDNTNDHKL 10 20 30 40 50 60 70 80 90 100 110 120 fj0279 NHKIIESLHFEKMDSFCVMIPNKIFSYLFLRTISKIFIFQFFYGTRKIKPSENYDICTSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 NHKIIESLHFEKMDSFCVMIPNKIFSYLFLRTISKIFIFQFFYGTRKIKPSENYDICTSF 70 80 90 100 110 120 fj0279 VY :: gi|620 VY 122 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Sun Aug 10 06:57:34 2008 done: Sun Aug 10 07:00:40 2008 Total Scan time: 492.500 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]