hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-07060765/chunk_1/iprscan-20080810-07060765.nocrc
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Query sequence: fj02819
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00560.23.ls Leucine Rich Repeat                             34.3      4e-07   8
PF00560.23.fs Leucine Rich Repeat                             22.8    3.4e-05   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00560.23.ls   8/8     257   277 ..     1    24 []    11.4        2

Alignments of top-scoring domains:
PF00560.23.ls: domain 8 of 8, from 257 to 277: score 11.4, E = 2
                   *->nLeeLdLsgCNpsltgslpssl.nl<-*
                      +L+eLdLs+ N  l g+    l+     
     fj02819   257    SLRELDLSN-N-CL-GDAGI-LqLV    277  

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