hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-07060765/chunk_1/iprscan-20080810-07060765.nocrc
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Query sequence: fj02819
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00368                                                 247.8    8.9e-70   9

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00368    1/9      27    54 ..     1    28 []    32.8  4.6e-05
SM00368    2/9      56    83 ..     1    28 []     2.7  1.1e+02
SM00368    3/9      84   111 ..     1    28 []    34.9  1.1e-05
SM00368    4/9     113   140 ..     1    28 []    28.6  0.00085
SM00368    5/9     141   168 ..     1    28 []    38.3    1e-06
SM00368    6/9     170   197 ..     1    28 []    10.8      7.9
SM00368    7/9     198   225 ..     1    28 []    36.5  3.7e-06
SM00368    8/9     227   254 ..     1    28 []    21.9     0.09
SM00368    9/9     255   282 ..     1    28 []    41.2  1.4e-07

Alignments of top-scoring domains:
SM00368: domain 1 of 9, from 27 to 54: score 32.8, E = 4.6e-05
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      +p  +eL +snN++ ++G+r+L+++Lk+   
     fj02819    27    KPDFKELTVSNNDINEAGVRVLCQGLKD    54   

SM00368: domain 2 of 9, from 56 to 83: score 2.7, E = 1.1e+02
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                       + L+ L L++++++ + +r L+   +s   
     fj02819    56    PCQLEALKLESCGVTSDNCRDLCGIVAS    83   

SM00368: domain 3 of 9, from 84 to 111: score 34.9, E = 1.1e-05
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      + sLreL L++Nklgd G+++L+ +L +   
     fj02819    84    KASLRELALGSNKLGDVGMAELCPGLLH    111  

SM00368: domain 4 of 9, from 113 to 140: score 28.6, E = 0.00085
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      +++Lr+L+++ ++++++G+  L+ +L++   
     fj02819   113    SSRLRTLWIWECGITAKGCGDLCRVLRA    140  

SM00368: domain 5 of 9, from 141 to 168: score 38.3, E = 1e-06
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      ++sL+eL+L++N lgdeGar L+e+L +   
     fj02819   141    KESLKELSLAGNELGDEGARLLCETLLE    168  

SM00368: domain 6 of 9, from 170 to 197: score 10.8, E = 7.9
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                       + L+ L++ ++ ++++ + +++++L++   
     fj02819   170    GCQLESLWVKSCSFTAACCSHFSSVLAQ    197  

SM00368: domain 7 of 9, from 198 to 225: score 36.5, E = 3.7e-06
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n+ L+eL++snN l d+G+r+L+++L +   
     fj02819   198    NRFLLELQISNNRLEDAGVRELCQGLGQ    225  

SM00368: domain 8 of 9, from 227 to 254: score 21.9, E = 0.09
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                       + Lr+L+L+++++ d+ +  La++L +   
     fj02819   227    GSVLRVLWLADCDVSDSSCSSLAATLLA    254  

SM00368: domain 9 of 9, from 255 to 282: score 41.2, E = 1.4e-07
                   *->npsLreLdLsnNklgdeGaraLaeaLks<-*
                      n+sLreLdLsnN+lgd+G+ +L e+ ++   
     fj02819   255    NHSLRELDLSNNCLGDAGILQLVESVRQ    282  

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