hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-09330870/chunk_1/iprscan-20090618-09330870.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj02959 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 275.4 1e-79 9 PF00096.16.fs Zinc finger, C2H2 type 257.7 2.2e-74 9 PF01096.9.fs Transcription factor S-II (TFIIS) 39.6 1.4e-11 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.fs 1/9 11 33 .. 1 24 [] 28.1 9.6e-06 PF00096.16.ls 1/9 11 33 .. 1 24 [] 30.0 7.5e-06 PF00096.16.ls 2/9 39 61 .. 1 24 [] 33.6 6.5e-07 PF00096.16.fs 2/9 39 61 .. 1 24 [] 31.6 1.3e-06 PF00096.16.ls 3/9 67 89 .. 1 24 [] 38.4 2.3e-08 PF00096.16.fs 3/9 67 89 .. 1 24 [] 36.4 8e-08 PF00096.16.ls 4/9 95 117 .. 1 24 [] 33.1 9.2e-07 PF00096.16.fs 4/9 95 117 .. 1 24 [] 31.1 1.7e-06 PF00096.16.ls 5/9 123 145 .. 1 24 [] 25.1 0.00023 PF00096.16.fs 5/9 123 145 .. 1 24 [] 23.2 0.00016 PF00096.16.ls 6/9 151 173 .. 1 24 [] 33.3 8e-07 PF00096.16.fs 6/9 151 173 .. 1 24 [] 31.3 1.5e-06 PF00096.16.ls 7/9 179 201 .. 1 24 [] 32.9 1e-06 PF00096.16.fs 7/9 179 201 .. 1 24 [] 30.9 1.8e-06 PF00096.16.ls 8/9 207 229 .. 1 24 [] 27.6 4e-05 PF00096.16.fs 8/9 207 229 .. 1 24 [] 25.7 3.8e-05 PF00096.16.ls 9/9 235 257 .. 1 24 [] 21.4 0.003 Alignments of top-scoring domains: PF00096.16.fs: domain 1 of 9, from 11 to 33: score 28.1, E = 9.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+Fs+ +L++H+ tH fj02959 11 YKCK-ECRKTFSQMTHLTQHQTTH 33 PF00096.16.ls: domain 1 of 9, from 11 to 33: score 30.0, E = 7.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +C k+Fs+ +L++H+ tH fj02959 11 YKCK-ECRKTFSQMTHLTQHQTTH 33 PF00096.16.ls: domain 2 of 9, from 39 to 61: score 33.6, E = 6.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fsr s L H+r+H fj02959 39 HECS-ECGKAFSRVSALIDHQRIH 61 PF00096.16.fs: domain 2 of 9, from 39 to 61: score 31.6, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fsr s L H+r+H fj02959 39 HECS-ECGKAFSRVSALIDHQRIH 61 PF00096.16.ls: domain 3 of 9, from 67 to 89: score 38.4, E = 2.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F+++++L rH++tH fj02959 67 YECK-ECGRAFTQSAQLIRHQKTH 89 PF00096.16.fs: domain 3 of 9, from 67 to 89: score 36.4, E = 8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F+++++L rH++tH fj02959 67 YECK-ECGRAFTQSAQLIRHQKTH 89 PF00096.16.ls: domain 4 of 9, from 95 to 117: score 33.1, E = 9.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+ksF + s+L H+r+H fj02959 95 YECS-KCKKSFVHLSSLIEHWRIH 117 PF00096.16.fs: domain 4 of 9, from 95 to 117: score 31.1, E = 1.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C+ksF + s+L H+r+H fj02959 95 YECS-KCKKSFVHLSSLIEHWRIH 117 PF00096.16.ls: domain 5 of 9, from 123 to 145: score 25.1, E = 0.00023 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dC+k+F+r +++ H+r+H fj02959 123 YQCK-DCKKTFCRVMQFTLHRRIH 145 PF00096.16.fs: domain 5 of 9, from 123 to 145: score 23.2, E = 0.00016 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dC+k+F+r +++ H+r+H fj02959 123 YQCK-DCKKTFCRVMQFTLHRRIH 145 PF00096.16.ls: domain 6 of 9, from 151 to 173: score 33.3, E = 8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs +s+L +H+rtH fj02959 151 YECK-ECGKSFSAHSSLVTHKRTH 173 PF00096.16.fs: domain 6 of 9, from 151 to 173: score 31.3, E = 1.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +CgksFs +s+L +H+rtH fj02959 151 YECK-ECGKSFSAHSSLVTHKRTH 173 PF00096.16.ls: domain 7 of 9, from 179 to 201: score 32.9, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +s+L +H+rtH fj02959 179 YKCK-ECGKAFSAHSSLVTHKRTH 201 PF00096.16.fs: domain 7 of 9, from 179 to 201: score 30.9, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs +s+L +H+rtH fj02959 179 YKCK-ECGKAFSAHSSLVTHKRTH 201 PF00096.16.ls: domain 8 of 9, from 207 to 229: score 27.6, E = 4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+F+++s+L +H r+H fj02959 207 YTCH-ACGKAFNTSSTLCQHNRIH 229 PF00096.16.fs: domain 8 of 9, from 207 to 229: score 25.7, E = 3.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ Cgk+F+++s+L +H r+H fj02959 207 YTCH-ACGKAFNTSSTLCQHNRIH 229 PF00096.16.ls: domain 9 of 9, from 235 to 257: score 21.4, E = 0.003 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksFs +s+L+rH r++ fj02959 235 FQCS-QCGKSFSCSSHLTRHCRMC 257 //