hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-09330870/chunk_1/iprscan-20090618-09330870.nocrc
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Query sequence: fj02959
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 228.6    5.5e-64   9

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/9      11    33 ..     1    23 []    25.1     0.01
SM00355      2/9      39    61 ..     1    23 []    29.8  0.00038
SM00355      3/9      67    89 ..     1    23 []    30.8  0.00019
SM00355      4/9      95   117 ..     1    23 []    27.2   0.0023
SM00355      5/9     123   145 ..     1    23 []    23.1    0.039
SM00355      6/9     151   173 ..     1    23 []    29.0  0.00063
SM00355      7/9     179   201 ..     1    23 []    29.0  0.00064
SM00355      8/9     207   229 ..     1    23 []    24.7    0.013
SM00355      9/9     235   255 ..     1    23 []     9.8       25

Alignments of top-scoring domains:
SM00355: domain 1 of 9, from 11 to 33: score 25.1, E = 0.01
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ C k+fs+ ++L++H+ +H   
     fj02959    11    YKCKE-CRKTFSQMtHLTQHQTTH    33   

SM00355: domain 2 of 9, from 39 to 61: score 29.8, E = 0.00038
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgk fs+ +aL+ H+r+H   
     fj02959    39    HECSE-CGKAFSRVsALIDHQRIH    61   

SM00355: domain 3 of 9, from 67 to 89: score 30.8, E = 0.00019
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cg+ f++  +L+rH+++H   
     fj02959    67    YECKE-CGRAFTQSaQLIRHQKTH    89   

SM00355: domain 4 of 9, from 95 to 117: score 27.2, E = 0.0023
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ C+ksf + ++L++H r+H   
     fj02959    95    YECSK-CKKSFVHLsSLIEHWRIH    117  

SM00355: domain 5 of 9, from 123 to 145: score 23.1, E = 0.039
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  C+k+f++  +++ H r+H   
     fj02959   123    YQCKD-CKKTFCRVmQFTLHRRIH    145  

SM00355: domain 6 of 9, from 151 to 173: score 29.0, E = 0.00063
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C++ Cgksfs +++L+ H r+H   
     fj02959   151    YECKE-CGKSFSAHsSLVTHKRTH    173  

SM00355: domain 7 of 9, from 179 to 201: score 29.0, E = 0.00064
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ykC++ Cgk fs +++L+ H r+H   
     fj02959   179    YKCKE-CGKAFSAHsSLVTHKRTH    201  

SM00355: domain 8 of 9, from 207 to 229: score 24.7, E = 0.013
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      y+C+  Cgk f++ + L +H r+H   
     fj02959   207    YTCHA-CGKAFNTSsTLCQHNRIH    229  

SM00355: domain 9 of 9, from 235 to 255: score 9.8, E = 25
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      ++C++ Cgksfs  ++L+rH r     
     fj02959   235    FQCSQ-CGKSFSCSsHLTRHCR--    255  

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