hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080810/iprscan-20080810-07114373/chunk_1/iprscan-20080810-07114373.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: fj03007 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.ls Myosin head (motor domain) 1026.7 0 1 PF00063.11.fs Myosin head (motor domain) 1024.8 0 1 PF06017.4.ls Myosin tail 271.5 1.6e-78 1 PF06017.4.fs Myosin tail 269.7 5.5e-78 1 PF00612.17.fs IQ calmodulin-binding motif 48.3 2.4e-13 3 PF00612.17.ls IQ calmodulin-binding motif 54.3 3.9e-13 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00063.11.fs 1/1 82 752 .. 1 791 [] 1024.8 0 PF00063.11.ls 1/1 82 752 .. 1 791 [] 1026.7 0 PF00612.17.fs 1/3 769 789 .. 1 21 [] 22.4 1.4e-05 PF00612.17.ls 1/3 769 789 .. 1 21 [] 24.3 0.00039 PF00612.17.ls 2/3 792 812 .. 1 21 [] 25.2 0.00022 PF00612.17.fs 2/3 792 812 .. 1 21 [] 23.2 7.8e-06 PF06017.4.fs 1/1 907 1093 .. 1 242 [] 269.7 5.5e-78 PF06017.4.ls 1/1 907 1093 .. 1 242 [] 271.5 1.6e-78 Alignments of top-scoring domains: PF00063.11.fs: domain 1 of 1, from 82 to 752: score 1024.8, E = 0 *->veDlveLtyl.nEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrL v D+v+L++ ++E+++++NL+ R+ lIYTY+G+vLvsvNPY+ L fj03007 82 VQDFVLLENFtSEAAFIENLRRRFR-ENLIYTYIGPVLVSVNPYRDL 127 piYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESG iY+ +++ YrG +E+pPH+FA+Ad YR++++++++Q + isGESG fj03007 128 QIYSRQHMERYRGVSFYEVPPHLFAVADTVYRALRTERRDQAVMISGESG 177 AGKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLE AGKTE+tK ++q+ A + + +g + d +lqsNP+LE fj03007 178 AGKTEATKRLLQFYAETCPAPE-----------RGGAVRDRLLQSNPVLE 216 AFGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVv AFGNAKT+RN+NSSRFGK++ +qFd +G + vGg+I YLLEKSRVv fj03007 217 AFGNAKTLRNDNSSRFGKYMDVQFDFKGAP----VGGHILSYLLEKSRVV 262 yQtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynP +Q+ gERNFHIFYQLL g ++ + L+L++ +p +Y YL +++ fj03007 263 HQNHGERNFHIFYQLLEGGEEET-LRRLGLER--NPQSYLYLVKGQ---- 305 cytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGF c +v i+D k +rkAl++i+ft+ e +++++i+A++LhLGNi F fj03007 306 CAKV-SSINDKSDWKVVRKALTVIDFTEDEVEDLLSIVASVLHLGNIH-F 353 kqdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrrikt + + e A +v +++ l LL v + L+ aL++r+i + fj03007 354 AANE-----ESNA--QVTTENQ--LKYLTRLLSVEGSTLREALTHRKIIA 394 GgggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsake + e p+n eqA+yaRDALAKa YsR F W+V+kiN++L +k+ fj03007 395 -----KGEELLSPLNLEQAAYARDALAKAVYSRTFTWLVGKINRSLASKD 439 QasdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaek V+ P + + G LDIyGFE+F ++ fj03007 440 ---------------------VESPSW---RSTTVLGLLDIYGFEVF-QH 464 NSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqac NSFEQ+cINY+NEKLQQ+F+++++k+EQEEY++EgI+W++++y ++n+++ fj03007 465 NSFEQFCINYCNEKLQQLFIELTLKSEQEEYEAEGIAWEPVQY-FNNKII 513 idLIEkKkPpGIlslLDEeCrfP.katDqtFldKLlqtfsskhprlthFA +dL+E k GI+s+LDEeC++P++atD tFl+KL +t+ +hp hF fj03007 514 CDLVEE-KFKGIISILDEECLRPgEATDLTFLEKLEDTV-KHHP---HF- 557 qkpgrfkkgk..srqgkteFiikHYAGdVeYnaegfleKNkDpLfddlis ++ +++++++ g++eF++ HYAG+V+Y+++gfl+KN+D+Lf++l + fj03007 558 LTH-KLADQRtrKSLGRGEFRLLHYAGEVTYSVTGFLDKNNDLLFRNLKE 606 llksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksaklg ++ sS++ p++++ F+ el fj03007 607 TMCSSKN-PIMSQCFDRSEL------------------------------ 625 sgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNek kk++ eTv+ qfk sl L++ L s +P +vRCIKPN+ fj03007 626 ------SDKKRP-ETVATQFKMSLLQLVEILQSK---EPAYVRCIKPNDA 665 KkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLap K++g FD+ l++hQ+++lG+LE + R+rraGF++R + FlqRY+ L+p fj03007 666 KQPGRFDEVLIRHQVKYLGLLE-NLRVRRAGFAYRRKYEAFLQRYKSLCP 714 ktwpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<- +tw p+w g +++g+ + +l ++ +eey++G TKiF+R fj03007 715 ETW-----PTWAGRPQDGVAVLVRHL-----GYKPEEYKMGRTKIFIR 752 * fj03007 - - PF00063.11.ls: domain 1 of 1, from 82 to 752: score 1026.7, E = 0 *->veDlveLtyl.nEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrL v D+v+L++ ++E+++++NL+ R+ lIYTY+G+vLvsvNPY+ L fj03007 82 VQDFVLLENFtSEAAFIENLRRRFR-ENLIYTYIGPVLVSVNPYRDL 127 piYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESG iY+ +++ YrG +E+pPH+FA+Ad YR++++++++Q + isGESG fj03007 128 QIYSRQHMERYRGVSFYEVPPHLFAVADTVYRALRTERRDQAVMISGESG 177 AGKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLE AGKTE+tK ++q+ A + + +g + d +lqsNP+LE fj03007 178 AGKTEATKRLLQFYAETCPAPE-----------RGGAVRDRLLQSNPVLE 216 AFGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVv AFGNAKT+RN+NSSRFGK++ +qFd +G + vGg+I YLLEKSRVv fj03007 217 AFGNAKTLRNDNSSRFGKYMDVQFDFKGAP----VGGHILSYLLEKSRVV 262 yQtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynP +Q+ gERNFHIFYQLL g ++ + L+L++ +p +Y YL +++ fj03007 263 HQNHGERNFHIFYQLLEGGEEET-LRRLGLER--NPQSYLYLVKGQ---- 305 cytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGF c +v i+D k +rkAl++i+ft+ e +++++i+A++LhLGNi F fj03007 306 CAKV-SSINDKSDWKVVRKALTVIDFTEDEVEDLLSIVASVLHLGNIH-F 353 kqdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrrikt + + e A +v +++ l LL v + L+ aL++r+i + fj03007 354 AANE-----ESNA--QVTTENQ--LKYLTRLLSVEGSTLREALTHRKIIA 394 GgggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsake + e p+n eqA+yaRDALAKa YsR F W+V+kiN++L +k+ fj03007 395 -----KGEELLSPLNLEQAAYARDALAKAVYSRTFTWLVGKINRSLASKD 439 QasdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaek V+ P + + G LDIyGFE+F ++ fj03007 440 ---------------------VESPSW---RSTTVLGLLDIYGFEVF-QH 464 NSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqac NSFEQ+cINY+NEKLQQ+F+++++k+EQEEY++EgI+W++++y ++n+++ fj03007 465 NSFEQFCINYCNEKLQQLFIELTLKSEQEEYEAEGIAWEPVQY-FNNKII 513 idLIEkKkPpGIlslLDEeCrfP.katDqtFldKLlqtfsskhprlthFA +dL+E k GI+s+LDEeC++P++atD tFl+KL +t+ +hp hF fj03007 514 CDLVEE-KFKGIISILDEECLRPgEATDLTFLEKLEDTV-KHHP---HF- 557 qkpgrfkkgk..srqgkteFiikHYAGdVeYnaegfleKNkDpLfddlis ++ +++++++ g++eF++ HYAG+V+Y+++gfl+KN+D+Lf++l + fj03007 558 LTH-KLADQRtrKSLGRGEFRLLHYAGEVTYSVTGFLDKNNDLLFRNLKE 606 llksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksaklg ++ sS++ p++++ F+ el fj03007 607 TMCSSKN-PIMSQCFDRSEL------------------------------ 625 sgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNek kk++ eTv+ qfk sl L++ L s +P +vRCIKPN+ fj03007 626 ------SDKKRP-ETVATQFKMSLLQLVEILQSK---EPAYVRCIKPNDA 665 KkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLap K++g FD+ l++hQ+++lG+LE + R+rraGF++R + FlqRY+ L+p fj03007 666 KQPGRFDEVLIRHQVKYLGLLE-NLRVRRAGFAYRRKYEAFLQRYKSLCP 714 ktwpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<- +tw p+w g +++g+ + +l ++ +eey++G TKiF+R fj03007 715 ETW-----PTWAGRPQDGVAVLVRHL-----GYKPEEYKMGRTKIFIR 752 * fj03007 - - PF00612.17.fs: domain 1 of 3, from 769 to 789: score 22.4, E = 1.4e-05 *->rraaikIQaawRGylaRkryk<-* + a+kIQaawRG+ R+++ fj03007 769 QSLATKIQAAWRGFHWRQKFL 789 PF00612.17.ls: domain 1 of 3, from 769 to 789: score 24.3, E = 0.00039 *->rraaikIQaawRGylaRkryk<-* + a+kIQaawRG+ R+++ fj03007 769 QSLATKIQAAWRGFHWRQKFL 789 PF00612.17.ls: domain 2 of 3, from 792 to 812: score 25.2, E = 0.00022 *->rraaikIQaawRGylaRkryk<-* +r+ai+IQ++wRG l R++ fj03007 792 KRSAICIQSWWRGTLGRRKAA 812 PF00612.17.fs: domain 2 of 3, from 792 to 812: score 23.2, E = 7.8e-06 *->rraaikIQaawRGylaRkryk<-* +r+ai+IQ++wRG l R++ fj03007 792 KRSAICIQSWWRGTLGRRKAA 812 PF06017.4.fs: domain 1 of 1, from 907 to 1093: score 269.7, E = 5.5e-78 *->lKvqAseifkGKKeryrqSvlsvRkFvGDYLgleeInpklqdavase +K++AseifkGKK++y+qSv+ R F+ ++Lg +eI+p++++a++se fj03007 907 QKAVASEIFKGKKDNYPQSVP--RLFISTRLGTDEISPRVLQALGSE 951 egqiikELRkdFgkVlFadkgevLVvKvnRsLsgKpspRaLlLTdkalyl ++++a++ VvK++R+ ++Kp++R+LlLT++a+++ fj03007 952 -------------PIQYAVP----VVKYDRK-GYKPRSRQLLLTPNAVVI 983 vdrkkkKkgpEKdqktyvlKrriPlseItsvSlSplqDdlfViHvke.dl v + +++K+ri+++++t++S+S+l+D lfV+Hv++ d+ fj03007 984 V-------------EDAKVKQRIDYANLTGISVSSLSDSLFVLHVQRaDN 1020 akgkgDlvLeldhkqPkkeeRitElvtvLlktylkatggnklnvnqfsds k+kgD+vL++dh+ +++L+kt+l+a+++n++n+nq+s++ fj03007 1021 -KQKGDVVLQSDHV-----------IETLTKTALSANRVNSININQGSIT 1058 ieyrlkkekwgpGktktvkfqkdatggsellifKkkkghlvsiapq<-* + ++++ ++++d+t+gselli K+k+ghl+++ap+ fj03007 1059 FAGGPGR-----------DGTIDFTPGSELLITKAKNGHLAVVAPR 1093 PF06017.4.ls: domain 1 of 1, from 907 to 1093: score 271.5, E = 1.6e-78 *->lKvqAseifkGKKeryrqSvlsvRkFvGDYLgleeInpklqdavase +K++AseifkGKK++y+qSv+ R F+ ++Lg +eI+p++++a++se fj03007 907 QKAVASEIFKGKKDNYPQSVP--RLFISTRLGTDEISPRVLQALGSE 951 egqiikELRkdFgkVlFadkgevLVvKvnRsLsgKpspRaLlLTdkalyl ++++a++ VvK++R+ ++Kp++R+LlLT++a+++ fj03007 952 -------------PIQYAVP----VVKYDRK-GYKPRSRQLLLTPNAVVI 983 vdrkkkKkgpEKdqktyvlKrriPlseItsvSlSplqDdlfViHvke.dl v + +++K+ri+++++t++S+S+l+D lfV+Hv++ d+ fj03007 984 V-------------EDAKVKQRIDYANLTGISVSSLSDSLFVLHVQRaDN 1020 akgkgDlvLeldhkqPkkeeRitElvtvLlktylkatggnklnvnqfsds k+kgD+vL++dh+ +++L+kt+l+a+++n++n+nq+s++ fj03007 1021 -KQKGDVVLQSDHV-----------IETLTKTALSANRVNSININQGSIT 1058 ieyrlkkekwgpGktktvkfqkdatggsellifKkkkghlvsiapq<-* + ++++ ++++d+t+gselli K+k+ghl+++ap+ fj03007 1059 FAGGPGR-----------DGTIDFTPGSELLITKAKNGHLAVVAPR 1093 //