hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-07114373/chunk_1/iprscan-20080810-07114373.nocrc
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Query sequence: fj03007
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                1284.1          0   1
SM00015                                                  56.2    4.3e-12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1      74   766 ..     1   771 []  1284.1        0
SM00015    1/2     767   789 ..     1    23 []    26.0   0.0051
SM00015    2/2     790   812 ..     1    23 []    30.2  0.00029

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 74 to 766: score 1284.1, E = 0
                   *->rnppkfegVeDmvlLtyLn.EpavlhNLkkRYlkdlIYTYiGlvLva
                         ++ +gV+D+vlL++ ++E+a+++NL+ R++++lIYTYiG+vLv+
     fj03007    74    LTARDRVGVQDFVLLENFTsEAAFIENLRRRFRENLIYTYIGPVLVS 120  

                   vNPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlr
                   vNPY++l  iY+++++++Yr      G s++E+pPH+FA+AD  Yr++++
     fj03007   121 VNPYRDL-QIYSRQHMERYR------GVSFYEVPPHLFAVADTVYRALRT 163  

                   ekeNQsIiISGESGAGKTEatKkimqYLAavsg...svesvedqiLesNP
                   e+++Q++ ISGESGAGKTEatK+++q+ A  +  ++ ++ v d++L+sNP
     fj03007   164 ERRDQAVMISGESGAGKTEATKRLLQFYAETCPapeRGGAVRDRLLQSNP 213  

                   iLEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVs
                   +LEAFGNAKT+RN+NSSRFGK+++++Fd+kG +vG++I  YLLEKSRVV+
     fj03007   214 VLEAFGNAKTLRNDNSSRFGKYMDVQFDFKGAPVGGHILSYLLEKSRVVH 263  

                   QakgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfan
                   Q+ gERN+HIFYQLL+G  ee +++lgL++   +p++Y YL +g      
     fj03007   264 QNHGERNFHIFYQLLEGGEEETLRRLGLER---NPQSYLYLVKGQ----- 305  

                   kryssgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAI
                         c +v++i+D+ ++k     ++kA++v+ f+e+E+e+ ++i+A++
     fj03007   306 ------CAKVSSINDKSDWKV----VRKALTVIDFTEDEVEDLLSIVASV 345  

                   LHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLt
                   LHLGNi F+++++  +na+vt+     e+ l+++ +LL v+ ++L++aLt
     fj03007   346 LHLGNIHFAANEE--SNAQVTT-----ENQLKYLTRLLSVEGSTLREALT 388  

                   kRkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINksl
                   +Rki ++ge   +  +pln+eqA+yaRDALAKa+YsR F WLV +IN+sl
     fj03007   389 HRKIIAKGE---ELLSPLNLEQAAYARDALAKAVYSRTFTWLVGKINRSL 435  

                   ...........sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnq
                    +++ ++++ +s+++ G LDIyGFE+F++NSFEQfCINy+NEKLQQ+F++
     fj03007   436 askdvespswrSTTVLGLLDIYGFEVFQHNSFEQFCINYCNEKLQQLFIE 485  

                   hvFKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDE
                   +++K+EQEEYe+EGI W+++++f  +N++++DL+E K    +GI+s+LDE
     fj03007   486 LTLKSEQEEYEAEGIAWEPVQYF--NNKIICDLVEEK---FKGIISILDE 530  

                   eClfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkk.gkp.kk
                   eCl+  ++++TD tFleKL  +      k hphf      +k  ++ ++k
     fj03007   531 ECLR--PGEATDLTFLEKLEDT-----VKHHPHFLT----HKLaDQRtRK 569  

                   rfgrtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknpliasL
                     gr +F++ HYAG+VtY+v+GFL+KN+D Lf++l+e+++sSknp++ ++
     fj03007   570 SLGRGEFRLLHYAGEVTYSVTGFLDKNNDLLFRNLKETMCSSKNPIMSQC 619  

                   FpeeadqsssaakekssggagksrkagrrepskgtisskkrppTvGsqFk
                   F+ ++ ++                              kkrp Tv++qFk
     fj03007   620 FDRSELSD------------------------------KKRPETVATQFK 639  

                   .sLneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEni
                    sL +L+e+L s++P ++RCIKPN+ K+pg Fd+ l++hQ++ylG+LEn+
     fj03007   640 mSLLQLVEILQSKEPAYVRCIKPNDAKQPGRFDEVLIRHQVKYLGLLENL 689  

                   RIRraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkaceal
                   R+RraGF+yR+ ++ FlqRYk L+p twp+w         g +++++ +l
     fj03007   690 RVRRAGFAYRRKYEAFLQRYKSLCPETWPTWA--------GRPQDGVAVL 731  

                   LqslglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                   + +lg        ++eey++G+TK+F+R+p +l++ E++ e    
     fj03007   732 VRHLG-------YKPEEYKMGRTKIFIRFPKTLFATEDALEV    766  

SM00015: domain 1 of 2, from 767 to 789: score 26.0, E = 0.0051
                   *->rleraAiiIQaawRGylaRkryk<-*
                      r+++ A++IQaawRG++ R+++    
     fj03007   767    RRQSLATKIQAAWRGFHWRQKFL    789  

SM00015: domain 2 of 2, from 790 to 812: score 30.2, E = 0.00029
                   *->rleraAiiIQaawRGylaRkryk<-*
                      r++r+Ai+IQ++wRG l R++     
     fj03007   790    RVKRSAICIQSWWRGTLGRRKAA    812  

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