hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-09390886/chunk_1/iprscan-20090618-09390886.nocrc
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Query sequence: fj03204
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF04777.3.fs Erv1 / Alr family                            72.1    3.9e-21   1
PF04777.3.ls Erv1 / Alr family                            74.0    4.4e-19   1
PF00085.10.fs Thioredoxin                                  36.2    1.4e-09   1
PF00085.10.ls Thioredoxin                                  24.1    1.7e-06   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00085.10.ls   1/1      69   182 ..     1   111 []    24.1  1.7e-06
PF00085.10.fs   1/1      83   154 ..    15    86 ..    36.2  1.4e-09
PF04777.3.fs   1/1     439   537 ..     1    97 []    72.1  3.9e-21
PF04777.3.ls   1/1     439   537 ..     1    97 []    74.0  4.4e-19

Alignments of top-scoring domains:
PF00085.10.ls: domain 1 of 1, from 69 to 182: score 24.1, E = 1.7e-06
                   *->vvlvltdenFdeevaksdekkpVLVdFYApWCGpCKmlAPeyeklAq
                       v+vl   +   + a+s+    +LV FY +WCG+C   AP++  lA 
     fj03204    69    AVWVLDSGSVRGATANSS--AAWLVQFYSSWCGHCIGYAPTWRALAG 113  

                   eykdetsdvkfaKVDaDen..pdlaskygVrgfPTlkffknGkkv....e
                   ++ d  s + +a +D+ e++++ ++ +y+++ +PT+  fk+  k  +++e
     fj03204   114 DVRDWASAIRVAALDCMEEknQAVCHDYDIHFYPTFRYFKAFTKEfttgE 163  

                   pidyvGa.RtkddLvafikkh<-*
                     ++ G++R++ + ++++ +    
     fj03204   164 --NFKGPdRELRTVRQTMIDF    182  

PF00085.10.fs: domain 1 of 1, from 83 to 154: score 36.2, E = 1.4e-09
                   *->aksdekkpVLVdFYApWCGpCKmlAPeyeklAqeykdetsdvkfaKV
                      a+s+    +LV FY +WCG+C   AP++  lA ++ d  s + +a +
     fj03204    83    ANSS--AAWLVQFYSSWCGHCIGYAPTWRALAGDVRDWASAIRVAAL 127  

                   DaDen..pdlaskygVrgfPTlkffkn<-*
                   D+ e++++ ++ +y+++ +PT+  fk+   
     fj03204   128 DCMEEknQAVCHDYDIHFYPTFRYFKA    154  

PF04777.3.fs: domain 1 of 1, from 439 to 537: score 72.1, E = 3.9e-21
                   *->tWtlLHtmaarYPdnPTp.......eekdemaqFlhiFskyfyPCte
                      +W+l+Ht++++++  P +  +++ +++++ ++q+++ + + f++C e
     fj03204   439    LWKLFHTLTVEASTHPDAlvgtgfeDDPQAVLQTMRRYVHTFFGCKE 485  

                   CakdfrkilemTkfGnppWqvsSReelalWlCkaHNkVNekLgKPkfdCs
                   C ++f+ +++  +  +   +v++ + ++lWl+k HN VN +L++ + +++
     fj03204   486 CGEHFEEMAK--E--SMD-SVKTPDQAILWLWKKHNMVNGRLAGHLSEDP 530  

                   efkkryr<-*
                   +f+k +    
     fj03204   531 RFPKLQW    537  

PF04777.3.ls: domain 1 of 1, from 439 to 537: score 74.0, E = 4.4e-19
                   *->tWtlLHtmaarYPdnPTp.......eekdemaqFlhiFskyfyPCte
                      +W+l+Ht++++++  P +  +++ +++++ ++q+++ + + f++C e
     fj03204   439    LWKLFHTLTVEASTHPDAlvgtgfeDDPQAVLQTMRRYVHTFFGCKE 485  

                   CakdfrkilemTkfGnppWqvsSReelalWlCkaHNkVNekLgKPkfdCs
                   C ++f+ +++  +  +   +v++ + ++lWl+k HN VN +L++ + +++
     fj03204   486 CGEHFEEMAK--E--SMD-SVKTPDQAILWLWKKHNMVNGRLAGHLSEDP 530  

                   efkkryr<-*
                   +f+k +    
     fj03204   531 RFPKLQW    537  

//