hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-15050354/chunk_1/iprscan-20090416-15050354.nocrc
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Query sequence: fj03263
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00456                                                  93.7    2.2e-23   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00456    1/2      35    67 ..     1    34 []    55.0  9.5e-12
SM00456    2/2      82   114 ..     1    34 []    38.6  8.3e-07

Alignments of top-scoring domains:
SM00456: domain 1 of 2, from 35 to 67: score 55.0, E = 9.5e-12
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                      plP+gWee+ d d G++YY++h++++t+W +Pr+   
     fj03263    35    PLPEGWEEARDFD-GKVYYIDHTNRTTSWIDPRD    67   

SM00456: domain 2 of 2, from 82 to 114: score 38.6, E = 8.3e-07
                   *->plPpgWeerkdpdsGrpYYyNheTketqWekPre<-*
                       lP gWee++dp+    Y+++h+Tk+tq e+Pr    
     fj03263    82    ELPLGWEEAYDPQ-VGDYFIDHNTKTTQIEDPRV    114  

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