hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-07305823/chunk_1/iprscan-20080810-07305823.nocrc
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Query sequence: fj03824
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00481.12.fs Protein phosphatase 2C                         229.8    5.4e-66   1
PF00481.12.ls Protein phosphatase 2C                         203.3    5.3e-58   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00481.12.ls   1/1      35   293 ..     1   303 []   203.3  5.3e-58
PF00481.12.fs   1/1     126   293 ..   116   303 .]   229.8  5.4e-66

Alignments of top-scoring domains:
PF00481.12.ls: domain 1 of 1, from 35 to 293: score 203.3, E = 5.3e-58
                   *->ldvgvsrmqgwrksmeDahialknlnsss........sgkdsisffa
                      + ++ ++++g+++++     +++ ++ s +++++ +++ +ds++  +
     fj03824    35    HKGPPHSKSGASDKLPRVAKSKF-FEDSEdesdeaeeEEEDSEECSE 80   

                   vfDghgGsqaakyagkhlekaltilaerksfpegnpnEwklsdledalrk
                     Dg    +a++  ++         +e+++++e         ++e+ +  
     fj03824    81 EEDGYSSEEAENEEDEDDT------EEAEEDDEE--------EEEEMMVP 116  

                   sfleadtdeelrsaadsanhvltkedlssGsTAvvalirgqkklLyvANv
                   + +         +  ++         ++sG+TAvvalirg++  L+vAN+
     fj03824   117 GMEG--------K--EEPG-------SDSGTTAVVALIRGKQ--LIVANA 147  

                   GDSravLcrngnaiklvtqLtedHkpsdedEkrRIeaaGGfvsrvsgngR
                   GDSr+v++ +g+a      +++dHkp+de E +RI++aGG v      gR
     fj03824   148 GDSRCVVSEAGKAL----DMSYDHKPEDEVELARIKNAGGKVTM---DGR 190  

                   vnGvfLavSRAfGDfelKpnvtlgpelslerGifseeqpVsaePdvtsst
                   vnG  L++SRA+GD+++K n++l+pe+          q++sa Pd+  + 
     fj03824   191 VNGG-LNLSRAIGDHFYKRNKNLPPEE----------QMISALPDIK-VL 228  

                   kiteskDeFliLAcDGlWDvvsdqeavdivrselsdgnks..agspmeaa
                   ++t++ +eF+++AcDG+W+v+s+qe+vd+++s +s+ + +++   ++ + 
     fj03824   229 TLTDD-HEFMVIACDGIWNVMSSQEVVDFIQSKISQRDENgeLRLLSSIV 277  

                   ekLvdeAiargseDni<-*
                   e+L+d ++a+ ++ ++   
     fj03824   278 EELLDQCLAPDTSGDG    293  

PF00481.12.fs: domain 1 of 1, from 126 to 293: score 229.8, E = 5.4e-66
                   *->lssGsTAvvalirgqkklLyvANvGDSravLcrngnaiklvtqLted
                      ++sG+TAvvalirg++  L+vAN+GDSr+v++ +g+a      +++d
     fj03824   126    SDSGTTAVVALIRGKQ--LIVANAGDSRCVVSEAGKAL----DMSYD 166  

                   HkpsdedEkrRIeaaGGfvsrvsgngRvnGvfLavSRAfGDfelKpnvtl
                   Hkp+de E +RI++aGG v      gRvnG  L++SRA+GD+++K n++l
     fj03824   167 HKPEDEVELARIKNAGGKVTM---DGRVNGG-LNLSRAIGDHFYKRNKNL 212  

                   gpelslerGifseeqpVsaePdvtsstkiteskDeFliLAcDGlWDvvsd
                   +pe+          q++sa Pd+  + ++t++ +eF+++AcDG+W+v+s+
     fj03824   213 PPEE----------QMISALPDIK-VLTLTDD-HEFMVIACDGIWNVMSS 250  

                   qeavdivrselsdgnks..agspmeaaekLvdeAiargseDni<-*
                   qe+vd+++s +s+ + +++   ++ + e+L+d ++a+ ++ ++   
     fj03824   251 QEVVDFIQSKISQRDENgeLRLLSSIVEELLDQCLAPDTSGDG    293  

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