hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-07305823/chunk_1/iprscan-20080810-07305823.nocrc
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Query sequence: fj03824
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00332                                                 229.5    2.9e-64   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00332    1/1      41   304 ..     1   338 []   229.5  2.9e-64

Alignments of top-scoring domains:
SM00332: domain 1 of 1, from 41 to 304: score 229.5, E = 2.9e-64
                   *->es.sgknlglryglgessmqgwrkpmEDahvirpffgVfDGHGGsea
                        +  +++ +r+++  s      +   D                 e 
     fj03824    41    SKsGASDKLPRVAK--SKFFEDSEDESDEAEEEE-----------ED 74   

                   akflsknlheilaeelsfdkdeslkeneelkdepesserlngdksledve
                   ++ +s+    +  ee ++++de                        +d+e
     fj03824    75 SEECSEEEDGYSSEEAENEEDE------------------------DDTE 100  

                   ealrkaFlrtdeei...............sTAvvalirgnklyvANvGDS
                   ea ++  ++ +e + ++ ++++++++++++TAvvalirg++l+vAN+GDS
     fj03824   101 EAEEDDEEEEEEMMvpgmegkeepgsdsgTTAVVALIRGKQLIVANAGDS 150  

                   RavLcrngkdswegvrtysavqLteDHkpsnedEreRIeaaGGevepidr
                   R+v++ +gk          a+++++DHkp++e+E++RI++aGG+      
     fj03824   151 RCVVSEAGK----------ALDMSYDHKPEDEVELARIKNAGGK------ 184  

                   efvsngggvvwRvnGvvisLavsRalGDfelKk.kedelieenrlyekfd
                    + ++g     RvnG    L++sRa+GD+++K++k               
     fj03824   185 -VTMDG-----RVNGG---LNLSRAIGDHFYKRnK--------------- 210  

                   prlpgkepyvsaePevtvvelsqtlvptedddfliLASDGlWDvlsnqea
                    +lp++e+++sa+P+++v +l      t+d++f+++A+DG+W+v+s+qe+
     fj03824   211 -NLPPEEQMISALPDIKVLTL------TDDHEFMVIACDGIWNVMSSQEV 253  

                   vdivrkhlrkgddk.evksaaqelaradslrskkhndpkeaaklLvdlAl
                   vd++++ ++++d+ +e+                    ++++ ++L d++l
     fj03824   254 VDFIQSKISQRDENgEL------------------RLLSSIVEELLDQCL 285  

                   ..........kDNiTvvvv<-*
                    ++++++++++DN+T++++   
     fj03824   286 apdtsgdgtgCDNMTCIII    304  

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