hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080810/iprscan-20080810-07385310/chunk_1/iprscan-20080810-07385310.nocrc
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Query sequence: fj03875
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    136.7    1.3e-45   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    138.7    1.5e-38   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1     135   403 ..     1   272 []   136.7  1.3e-45
PF00001.12.ls   1/1     135   403 ..     1   272 []   138.7  1.5e-38

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 135 to 403: score 136.7, E = 1.3e-45
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN+  + +i+++k +r+ +ni+i +LA+ DLL  +   p+++y l+ 
     fj03875   135    GNSTLLRIIYKNKCMRNGPNILIASLALGDLLHIVIDIPINVYKLLA 181  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                    edWpfG  +Cklv +++ +++   +l+L+a+SiDRY A+    r + + 
     fj03875   182 -EDWPFGAEMCKLVPFIQKASVGITVLSLCALSIDRYRAVASWSRIKGIG 230  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                     p++++v i+l+Wv++++l++P +++++  t  + ++  + ++Cl++ p
     fj03875   231 V-PKWTAVEIVLIWVVSVVLAVPEAIGFDIITMDYKGS--YLRICLLH-P 276  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrk..rarkg
                    ++ta  + +  +  ++++ + F lPl + +++Yt++ +++ ++++ +++
     fj03875   277 VQKTAFMQFYKTAKDWWLFSFYFCLPLAITAFFYTLMTCEMLRkkSGMQI 326  

                   askkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssC
                   a     +++r +akt++ +v+vF+lCWlP+++  +l         +++ C
     fj03875   327 ALNDHLKQRREVAKTVFCLVLVFALCWLPLHLSRILKLTLyNQ-NDPNRC 375  

                   elervlptallvtlwLayvNsclNPiIY<-*
                   el  +l  + ++ +  a +Nsc+NPi     
     fj03875   376 ELLSFLLVLDYIGINMASLNSCINPIAL    403  

PF00001.12.ls: domain 1 of 1, from 135 to 403: score 138.7, E = 1.5e-38
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN+  + +i+++k +r+ +ni+i +LA+ DLL  +   p+++y l+ 
     fj03875   135    GNSTLLRIIYKNKCMRNGPNILIASLALGDLLHIVIDIPINVYKLLA 181  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                    edWpfG  +Cklv +++ +++   +l+L+a+SiDRY A+    r + + 
     fj03875   182 -EDWPFGAEMCKLVPFIQKASVGITVLSLCALSIDRYRAVASWSRIKGIG 230  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                     p++++v i+l+Wv++++l++P +++++  t  + ++  + ++Cl++ p
     fj03875   231 V-PKWTAVEIVLIWVVSVVLAVPEAIGFDIITMDYKGS--YLRICLLH-P 276  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrk..rarkg
                    ++ta  + +  +  ++++ + F lPl + +++Yt++ +++ ++++ +++
     fj03875   277 VQKTAFMQFYKTAKDWWLFSFYFCLPLAITAFFYTLMTCEMLRkkSGMQI 326  

                   askkrsskerkaaktllvvvvvFvlCWlPyfivllldtlc.lsiimsssC
                   a     +++r +akt++ +v+vF+lCWlP+++  +l         +++ C
     fj03875   327 ALNDHLKQRREVAKTVFCLVLVFALCWLPLHLSRILKLTLyNQ-NDPNRC 375  

                   elervlptallvtlwLayvNsclNPiIY<-*
                   el  +l  + ++ +  a +Nsc+NPi     
     fj03875   376 ELLSFLLVLDYIGINMASLNSCINPIAL    403  

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