hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-15124117/chunk_1/iprscan-20090416-15124117.nocrc
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Query sequence: fj03879s2
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                       79.0    1.3e-23   1
PF00169.19.ls PH domain                                       81.0    3.3e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1    1788  1896 ..     1    92 []    79.0  1.3e-23
PF00169.19.ls   1/1    1788  1896 ..     1    92 []    81.0  3.3e-21

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 1788 to 1896: score 79.0, E = 1.3e-23
                   *->vikeGwLlkkg.............gkkswkkRyfvLfddvLlyykdk
                       +k+Gw++   +++++++++ ++++ ++wkk++fvL+d++L yy+d+
   fj03879s2  1788    NFKKGWMSILDepgeppspsltttSTSQWKKHWFVLTDSSLKYYRDS 1834 

                   k....kkpkgsipLsgi.qvtkvpdnkrkncFeirt.dretlllqaesee
                   + ++ +++ g i+L++++ vt++  + r+++F+i+t+d  +++l+a ++ 
   fj03879s2  1835 TaeeaDELDGEIDLRSCtDVTEYAVQ-RNYGFQIHTkDA-VYTLSAMTSG 1882 

                   erkeWvkaiqsair<-*
                    r+ W++a+++ +r   
   fj03879s2  1883 IRRNWIEALRKTVR    1896 

PF00169.19.ls: domain 1 of 1, from 1788 to 1896: score 81.0, E = 3.3e-21
                   *->vikeGwLlkkg.............gkkswkkRyfvLfddvLlyykdk
                       +k+Gw++   +++++++++ ++++ ++wkk++fvL+d++L yy+d+
   fj03879s2  1788    NFKKGWMSILDepgeppspsltttSTSQWKKHWFVLTDSSLKYYRDS 1834 

                   k....kkpkgsipLsgi.qvtkvpdnkrkncFeirt.dretlllqaesee
                   + ++ +++ g i+L++++ vt++  + r+++F+i+t+d  +++l+a ++ 
   fj03879s2  1835 TaeeaDELDGEIDLRSCtDVTEYAVQ-RNYGFQIHTkDA-VYTLSAMTSG 1882 

                   erkeWvkaiqsair<-*
                    r+ W++a+++ +r   
   fj03879s2  1883 IRRNWIEALRKTVR    1896 

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