hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-15124117/chunk_1/iprscan-20090416-15124117.nocrc
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Query sequence: fj03879s2
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
SM00233                                                  78.7      7e-19   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
SM00233        1/1    1788  1898 ..     1    82 []    78.7    7e-19

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 1788 to 1898: score 78.7, E = 7e-19
                   *->vikeGwLlkks..............k.swkkryfvLfngvLlyyksk
                        k+Gw++++  ++ +++++ ++++ ++wkk++fvL++++L yy+++
   fj03879s2  1788    NFKKGWMSILDepgeppspsltttsTsQWKKHWFVLTDSSLKYYRDS 1834 

                   ......kpkgsipLsgc.svre.p.....cFeivt.drtlllqAeseeer
                   + ++ +++ g+i+L++c+ v+e +  ++ +F+i+t+d +++l+A ++  r
   fj03879s2  1835 taeeadELDGEIDLRSCtDVTEyAvqrnyGFQIHTkDAVYTLSAMTSGIR 1884 

                   eeWvealqsaiaka<-*
                   + W+eal++ +++    
   fj03879s2  1885 RNWIEALRKTVRPT    1898 

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