hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-09452595/chunk_1/iprscan-20090618-09452595.nocrc
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Query sequence: fj03968
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00620.17.fs RhoGAP domain                                  244.0    1.1e-71   1
PF00620.17.ls RhoGAP domain                                  245.9    7.8e-71   1
PF00169.19.fs PH domain                                       48.0    3.8e-14   1
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)          46.2    2.5e-12   1
PF00169.19.ls PH domain                                       50.0    7.3e-12   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          47.4    4.4e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00595.14.ls   1/1      64   173 ..     1    86 []    47.4  4.4e-11
PF00595.14.fs   1/1      94   173 ..    16    86 .]    46.2  2.5e-12
PF00169.19.fs   1/1     710   829 ..     1    92 []    48.0  3.8e-14
PF00169.19.ls   1/1     710   829 ..     1    92 []    50.0  7.3e-12
PF00620.17.fs   1/1     941  1094 ..     1   155 []   244.0  1.1e-71
PF00620.17.ls   1/1     941  1094 ..     1   155 []   245.9  7.8e-71

Alignments of top-scoring domains:
PF00595.14.ls: domain 1 of 1, from 64 to 173: score 47.4, E = 4.4e-11
                   *->evtlekedkrgglGfsikggsdkga......................
                      ++ l k+  + g+Gf+++      +    ++++  + + ++++++++
     fj03968    64    TLLLYKS-PQDGFGFTLR------Hfivyppesavhcslkeeenggr 103  

                   ............dkgifvsevlpGsgaAeagGrLqaGDqIlsvNGqdlen
                   +++++++ + ++  +ifv++v ++ g+A+++G L+ GD++++vNG+++ +
     fj03968   104 gggpspryrlepMDTIFVKNVKED-GPAHRAG-LRTGDRLVKVNGESVIG 151  

                   lsheeavlalkgsggsevtLtvl<-*
                    +  ++++++++s + ++ L ++   
     fj03968   152 KTYSQVIALIQNSDD-TLELSIM    173  

PF00595.14.fs: domain 1 of 1, from 94 to 173: score 46.2, E = 2.5e-12
                   *->sikggsdkga............dkgifvsevlpGsgaAeagGrLqaG
                      s+k+++++g++++++++ + ++  +ifv++v ++ g+A+++G L+ G
     fj03968    94    SLKEEENGGRgggpspryrlepMDTIFVKNVKED-GPAHRAG-LRTG 138  

                   DqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   D++++vNG+++ + +  ++++++++s + ++ L ++   
     fj03968   139 DRLVKVNGESVIGKTYSQVIALIQNSDD-TLELSIM    173  

PF00169.19.fs: domain 1 of 1, from 710 to 829: score 48.0, E = 3.8e-14
                   *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk.
                      + +eGwL+ k   ++++++ ++g+++wk++y+ L+ ++L++ k++ +
     fj03968   710    IRREGWLYYKQiltkkgkkagsGLRQWKRVYAALRARSLSLSKERRe 756  

                   ..............kkpkgsipLsgiqvtkvpdn.krkncFeirt.dret
                   +++   +    + +++    + + ++ v++  + +kr+++F+++t d  +
     fj03968   757 pgpaaagaaaagagEDEAAPVCIGSCLVDISYSEtKRRHVFRLTTaDFCE 806  

                   lllqaeseeerkeWvkaiqsair<-*
                   +l+qae+ +++  W++ai++ +r   
     fj03968   807 YLFQAEDRDDMLGWIRAIRENSR    829  

PF00169.19.ls: domain 1 of 1, from 710 to 829: score 50.0, E = 7.3e-12
                   *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk.
                      + +eGwL+ k   ++++++ ++g+++wk++y+ L+ ++L++ k++ +
     fj03968   710    IRREGWLYYKQiltkkgkkagsGLRQWKRVYAALRARSLSLSKERRe 756  

                   ..............kkpkgsipLsgiqvtkvpdn.krkncFeirt.dret
                   +++   +    + +++    + + ++ v++  + +kr+++F+++t d  +
     fj03968   757 pgpaaagaaaagagEDEAAPVCIGSCLVDISYSEtKRRHVFRLTTaDFCE 806  

                   lllqaeseeerkeWvkaiqsair<-*
                   +l+qae+ +++  W++ai++ +r   
     fj03968   807 YLFQAEDRDDMLGWIRAIRENSR    829  

PF00620.17.fs: domain 1 of 1, from 941 to 1094: score 244.0, E = 1.1e-71
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdl.
                      Pliv  C++ +e+rGL++ GIyRv+G+ +++  L+e+++rg+ +   
     fj03968   941    PLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGDINl 987  

                   ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerle
                   +d++++d +v++slLK F+R+LPePL+t++ y++fie a ++ed++er++
     fj03968   988 QDERWQDLNVISSLLKSFFRKLPEPLFTDDKYNDFIE-ANRIEDARERMR 1036 

                   alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl
                    lr+l+r LP + ++tL++L++hL+ +a++se+NkM ++NLA+vFgPtL+
     fj03968  1037 TLRKLIRDLPGHYYETLKFLVGHLKTIADHSEKNKMEPRNLALVFGPTLV 1086 

                   rppdgdsad<-*
                   r++++ +++   
     fj03968  1087 RTSED-NMT    1094 

PF00620.17.ls: domain 1 of 1, from 941 to 1094: score 245.9, E = 7.8e-71
                   *->PlivekCieflekrGLdtEGIyRvsGsksrikeLreafdrgedvdl.
                      Pliv  C++ +e+rGL++ GIyRv+G+ +++  L+e+++rg+ +   
     fj03968   941    PLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGDINl 987  

                   ndleeedvhvvAslLKlFLReLPePLltfelyeefieaaaksedeeerle
                   +d++++d +v++slLK F+R+LPePL+t++ y++fie a ++ed++er++
     fj03968   988 QDERWQDLNVISSLLKSFFRKLPEPLFTDDKYNDFIE-ANRIEDARERMR 1036 

                   alrellrkLPpaNrdtLryLlahLnrVaqnsevNkMtahNLAivFgPtLl
                    lr+l+r LP + ++tL++L++hL+ +a++se+NkM ++NLA+vFgPtL+
     fj03968  1037 TLRKLIRDLPGHYYETLKFLVGHLKTIADHSEKNKMEPRNLALVFGPTLV 1086 

                   rppdgdsad<-*
                   r++++ +++   
     fj03968  1087 RTSED-NMT    1094 

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