hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-09452595/chunk_1/iprscan-20090618-09452595.nocrc
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Query sequence: fj03968
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00324                                                 232.6    3.4e-65   1
SM00228                                                  74.2    1.6e-17   1
SM00233                                                  53.5    2.8e-11   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00228     1/1      73   176 ..     1    80 []    74.2  1.6e-17
SM00233     1/1     710   831 ..     1    82 []    53.5  2.8e-11
SM00324     1/1     938  1115 ..     1   193 []   232.6  3.4e-65

Alignments of top-scoring domains:
SM00228: domain 1 of 1, from 73 to 176: score 74.2, E = 1.6e-17
                   *->gglGfsivg....................................gi
                       g+Gf+++     ++++  + + +++++++++++++++ + ++ + i
     fj03968    73    DGFGFTLRHfivyppesavhcslkeeenggrgggpspryrlepmdTI 119  

                   fvssvvpGspAakaGrkslglLkvGDvIleVNGetsvegltheeavdllk
                   fv++v++++pA++aG      L+ GD++++VNG +sv g+t+ ++++l++
     fj03968   120 FVKNVKEDGPAHRAG------LRTGDRLVKVNG-ESVIGKTYSQVIALIQ 162  

                   kaggggvGekvtLtvlRgg<-*
                   ++ +     +++L + +++   
     fj03968   163 NSDD-----TLELSIMPKD    176  

SM00233: domain 1 of 1, from 710 to 831: score 53.5, E = 2.8e-11
                   *->vikeGwLlkks............k.swkkryfvLfngvLlyyksk..
                      + +eGwL+ k   ++++++ ++++++wk++y+ L+ ++L++ k++++
     fj03968   710    IRREGWLYYKQiltkkgkkagsgLrQWKRVYAALRARSLSLSKERre 756  

                   ...............kpkgsipLsgcsvre.p.......cFeivt.dr.t
                   +++   +    + +++   ++ + +c v+ + ++ +++++F+++t d  +
     fj03968   757 pgpaaagaaaagageDEAAPVCIGSCLVDIsYsetkrrhVFRLTTaDFcE 806  

                   lllqAeseeereeWvealqsaiaka<-*
                   +l+qAe+ +++  W++a+++ ++     
     fj03968   807 YLFQAEDRDDMLGWIRAIRENSRAE    831  

SM00324: domain 1 of 1, from 938 to 1115: score 232.6, E = 3.4e-65
                   *->spiPiivekCieylekrGldteGIYRvsGsksrvkeLreafdsged.
                      +++P+iv+ C++ +e+rGl+  GIYRv+G++ +v  L+e++++g+ +
     fj03968   938    QRVPLIVAACCRIVEARGLESTGIYRVPGNNAVVSSLQEQLNRGPGd 984  

                   dldsldesiteesedleeydvhdvAglLKlyLReLPePLltfelyeefie
                     +           d++++d +++++lLK+++R+LPePL+t++ y +fie
     fj03968   985 INLQ----------DERWQDLNVISSLLKSFFRKLPEPLFTDDKYNDFIE 1024 

                   aaklyqieatsrkqseksedeeerlralrellslLPpanratLryLl.HL
                   a ++              ed  er r lr+l++ LP ++++tL++L +HL
     fj03968  1025 ANRI--------------EDARERMRTLRKLIRDLPGHYYETLKFLVgHL 1060 

                   nrVaehsevNkMtarNLAivFgPtLlrpp.......ltdikhqnkvvetl
                   + +a+hse+NkM +rNLA+vFgPtL r ++++ ++ +t++    k+vetl
     fj03968  1061 KTIADHSEKNKMEPRNLALVFGPTLVRTSednmtdmVTHMPDRYKIVETL 1110 

                   ienad<-*
                   i+++d   
     fj03968  1111 IQHSD    1115 

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